Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   OB04_RS13060 Genome accession   NZ_CP009796
Coordinates   2518996..2519613 (-) Length   205 a.a.
NCBI ID   WP_038429326.1    Uniprot ID   -
Organism   Bacillus subtilis strain SG6     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2513996..2524613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS13035 (OB04_02556) rpsT 2514298..2514564 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  OB04_RS13040 (OB04_02557) holA 2514579..2515622 (-) 1044 WP_038429324.1 DNA polymerase III subunit delta -
  OB04_RS22275 - 2515662..2515811 (-) 150 WP_003229985.1 hypothetical protein -
  OB04_RS21730 yqzM 2515852..2515986 (+) 135 WP_003229983.1 YqzM family protein -
  OB04_RS13050 (OB04_02558) comEC 2516026..2518356 (-) 2331 WP_038429325.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OB04_RS13055 (OB04_02559) comEB 2518360..2518929 (-) 570 WP_003229978.1 ComE operon protein 2 -
  OB04_RS13060 (OB04_02560) comEA 2518996..2519613 (-) 618 WP_038429326.1 competence protein ComEA Machinery gene
  OB04_RS13065 (OB04_02561) comER 2519697..2520518 (+) 822 WP_004398597.1 late competence protein ComER -
  OB04_RS13070 (OB04_02562) yqeM 2520584..2521327 (-) 744 WP_038429327.1 class I SAM-dependent methyltransferase -
  OB04_RS13075 (OB04_02563) rsfS 2521324..2521680 (-) 357 WP_014480315.1 ribosome silencing factor -
  OB04_RS13080 (OB04_02564) yqeK 2521698..2522258 (-) 561 WP_014480316.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  OB04_RS13085 (OB04_02565) nadD 2522248..2522817 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  OB04_RS13090 (OB04_02566) yhbY 2522829..2523119 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  OB04_RS13095 (OB04_02567) aroE 2523113..2523955 (-) 843 WP_038429328.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21770.48 Da        Isoelectric Point: 4.8354

>NTDB_id=132348 OB04_RS13060 WP_038429326.1 2518996..2519613(-) (comEA) [Bacillus subtilis strain SG6]
MNWLNQHKKAIILAASAAVFTAIMIFLATGKNKEPVKQAVPTETENTVVKQEANNDESSETIVIDIKGAVRHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGGSVQSDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=132348 OB04_RS13060 WP_038429326.1 2518996..2519613(-) (comEA) [Bacillus subtilis strain SG6]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTCTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCTTTCT
GGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACGAGTCAAGCGAAACAATTGTGATAGACATCAAAGGTGCTGTTCGGCATCCTGGCGTTTATGAAATGCGAACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGGGTCTG
TCCAAAGCGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGGCGTTTCCAAACAATTGAAGATATCACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAGAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(142-203)

SLBB domain (SLBB)

(63-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

99.024

100

0.99
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

36.364

100

0.39

Multiple sequence alignment