Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   OB04_RS02000 Genome accession   NZ_CP009796
Coordinates   390915..391865 (+) Length   316 a.a.
NCBI ID   WP_038428356.1    Uniprot ID   A0AA96ZV99
Organism   Bacillus subtilis strain SG6     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 385915..396865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OB04_RS01975 (OB04_00384) rapC 387374..388522 (+) 1149 WP_003246686.1 response regulator aspartate phosphatase RapC Regulator
  OB04_RS01980 (OB04_00385) phrC 388506..388628 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  OB04_RS21215 (OB04_00386) yczM 388728..388817 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  OB04_RS21220 (OB04_00387) yczN 388899..389012 (-) 114 WP_003234495.1 YjcZ family sporulation protein -
  OB04_RS01995 (OB04_00388) thrD 389166..390530 (-) 1365 WP_038428355.1 aspartate kinase -
  OB04_RS02000 (OB04_00389) ceuB 390915..391865 (+) 951 WP_038428356.1 petrobactin ABC transporter permease YclN Machinery gene
  OB04_RS02005 (OB04_00390) yclO 391858..392805 (+) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  OB04_RS02010 (OB04_00391) yclP 392799..393557 (+) 759 WP_003234487.1 petrobactin ABC transporter ATP-binding protein YclP -
  OB04_RS02015 (OB04_00392) yclQ 393579..394532 (+) 954 WP_038428358.1 petrobactin ABC transporter substrate-binding protein YclQ -
  OB04_RS02020 (OB04_00393) cdaE 394579..395997 (-) 1419 WP_014478836.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34885.30 Da        Isoelectric Point: 9.9364

>NTDB_id=132307 OB04_RS02000 WP_038428356.1 390915..391865(+) (ceuB) [Bacillus subtilis strain SG6]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIVIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYLYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=132307 OB04_RS02000 WP_038428356.1 390915..391865(+) (ceuB) [Bacillus subtilis strain SG6]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGTGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTGTCA
TCGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTTGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATTTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
TGCGCTGTTGGGAGCAGTTTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment