Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   BG05_RS04490 Genome accession   NZ_CP009692
Coordinates   504506..505027 (+) Length   173 a.a.
NCBI ID   WP_000981963.1    Uniprot ID   -
Organism   Bacillus mycoides strain ATCC 6462     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 499506..510027
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG05_RS04460 (BG05_524) spo0J 499977..500828 (+) 852 WP_175491564.1 stage 0 sporulation protein Spo0J -
  BG05_RS04465 (BG05_525) yyaC 500849..501445 (-) 597 WP_001020734.1 spore protease YyaC -
  BG05_RS04470 (BG05_526) - 501706..502563 (+) 858 WP_000362302.1 mechanosensitive ion channel family protein -
  BG05_RS04475 (BG05_527) - 502623..502781 (+) 159 WP_206764105.1 DUF951 domain-containing protein -
  BG05_RS04480 (BG05_528) ychF 502897..503997 (+) 1101 WP_000524661.1 redox-regulated ATPase YchF -
  BG05_RS04485 (BG05_529) rpsF 504189..504479 (+) 291 WP_001233782.1 30S ribosomal protein S6 -
  BG05_RS04490 (BG05_530) ssbA 504506..505027 (+) 522 WP_000981963.1 single-stranded DNA-binding protein Machinery gene
  BG05_RS04495 (BG05_531) rpsR 505072..505305 (+) 234 WP_000918874.1 30S ribosomal protein S18 -
  BG05_RS04500 (BG05_532) - 505387..506322 (+) 936 WP_002130187.1 YybS family protein -
  BG05_RS04505 (BG05_533) - 506401..508374 (+) 1974 WP_002016460.1 DHH family phosphoesterase -
  BG05_RS04510 (BG05_534) rplI 508371..508817 (+) 447 WP_002130186.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 18809.58 Da        Isoelectric Point: 4.9222

>NTDB_id=131263 BG05_RS04490 WP_000981963.1 504506..505027(+) (ssbA) [Bacillus mycoides strain ATCC 6462]
MMNRVILVGRLTKDPDLRYTPNGVAVATFTLAVNRAFANQQGEREADFINCVIWRKQAENVANYLKKGSLAGVDGRLQTR
NYDGQDGKRVYVTEVLAESVQFLEPRNGGGEQRGSFNQQPSGAGFGNQSSNPFGQSSNSGNQGNQGNSGFTKNDDPFSNV
GQPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=131263 BG05_RS04490 WP_000981963.1 504506..505027(+) (ssbA) [Bacillus mycoides strain ATCC 6462]
TTGATGAATCGTGTTATCCTCGTTGGTCGTTTAACTAAGGACCCTGACTTACGTTACACGCCCAATGGTGTTGCAGTAGC
TACTTTTACGTTAGCTGTGAATCGCGCATTTGCGAATCAACAAGGTGAGCGTGAAGCTGACTTTATTAATTGTGTAATAT
GGCGTAAACAAGCAGAAAACGTGGCAAATTATTTGAAAAAAGGTAGCTTAGCAGGCGTAGACGGACGTCTTCAAACTCGT
AATTACGATGGACAAGATGGTAAACGTGTATATGTAACAGAAGTTCTTGCGGAGAGCGTACAATTTTTAGAGCCGCGTAA
TGGCGGTGGGGAGCAACGTGGTTCATTCAATCAGCAACCATCAGGAGCTGGTTTCGGTAACCAAAGCTCTAACCCATTTG
GTCAATCTAGTAATTCAGGTAACCAAGGTAATCAAGGTAACTCTGGATTTACGAAGAATGACGATCCATTTTCGAATGTT
GGTCAACCGATTGACATTTCGGACGACGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

71.751

100

0.734
  ssb Latilactobacillus sakei subsp. sakei 23K

57.714

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393
  ssb Glaesserella parasuis strain SC1401

36.264

100

0.382

Multiple sequence alignment