Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BG05_RS04395 Genome accession   NZ_CP009692
Coordinates   487059..488186 (-) Length   375 a.a.
NCBI ID   WP_002016486.1    Uniprot ID   -
Organism   Bacillus mycoides strain ATCC 6462     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 482059..493186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG05_RS04385 (BG05_509) gyrA 482538..485009 (-) 2472 WP_002016488.1 DNA gyrase subunit A -
  BG05_RS04390 (BG05_510) gyrB 485098..487020 (-) 1923 WP_002034986.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BG05_RS04395 (BG05_511) recF 487059..488186 (-) 1128 WP_002016486.1 DNA replication/repair protein RecF Machinery gene
  BG05_RS04400 (BG05_512) yaaA 488199..488411 (-) 213 WP_002016484.1 S4 domain-containing protein YaaA -
  BG05_RS04405 (BG05_513) dnaN 488540..489685 (-) 1146 WP_002130198.1 DNA polymerase III subunit beta -
  BG05_RS04410 (BG05_514) dnaA 489868..491208 (-) 1341 WP_002016481.1 chromosomal replication initiator protein DnaA -
  BG05_RS04415 (BG05_515) rpmH 491772..491906 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  BG05_RS04420 (BG05_516) rnpA 491983..492330 (+) 348 WP_002089963.1 ribonuclease P protein component -
  BG05_RS04425 (BG05_517) spoIIIJ 492383..493150 (+) 768 WP_002130197.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43500.76 Da        Isoelectric Point: 6.8418

>NTDB_id=131262 BG05_RS04395 WP_002016486.1 487059..488186(-) (recF) [Bacillus mycoides strain ATCC 6462]
MFITEIQLKNYRNYEHLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDYGNIKGRLQRRNSS
VSLELNISKKGKKAKLNQLEQQKLSQYIGEMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILRKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLLGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVEGIEHETLKEAKTIHVTNGTVDCEIDRK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=131262 BG05_RS04395 WP_002016486.1 487059..488186(-) (recF) [Bacillus mycoides strain ATCC 6462]
TTGTTTATTACAGAAATACAATTAAAAAACTATCGCAATTATGAGCATTTAGAGCTTTCCTTTGAGGATAAAGTCAATGT
AATTATTGGTGAAAATGCGCAAGGGAAAACGAATCTGATGGAAGCTATTTATGTATTGGCGATGGCGAAATCTCATAGAA
CTTCGAACGATCGTGAACTCATTCGTTGGGATGAGGATTATGGTAATATAAAAGGTAGATTACAAAGGCGAAATAGTTCA
GTATCCTTAGAATTAAATATTTCAAAAAAAGGTAAAAAGGCAAAGTTAAATCAGTTAGAACAACAAAAATTGAGCCAGTA
TATTGGTGAAATGAATGTTGTTATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTACGAAGACGCT
TTTTGGATATGGAACTTGGACAAATAGCTCCGGTCTATTTGTATGAATTAAGTCAATATCAAAAGGTACTCACGCAACGA
AATCATTTACTTAAGAAGATGCAAGGGAATAGTAAAAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTTATTGA
GCATGGTGCAAAAATTTTGCGAAAACGTTTTGAGTTTTTGCATTTACTACAAGAATGGGCTGCTCCAATTCATCGCGGAA
TTAGCAGGGGATTAGAGGAGTTAGAAATCGTTTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAGGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTTCGGGGTACAACTTTACTTGGTCCTCATCG
TGATGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCACAAGGACAACAACGAACAACCGCACTAT
CCCTAAAATTGGCTGAAATTGAATTGATATACTCAGAGGTTAAGGAATATCCAATTCTTTTACTAGATGATGTGTTATCA
GAATTAGATGATTATCGTCAATCGCATCTGCTAAATACAATTCAAGGAAAAGTACAAACCTTTGTGACAACGACGAGTGT
CGAGGGAATTGAACACGAAACATTGAAAGAAGCGAAAACAATTCATGTAACGAACGGCACGGTAGATTGTGAAATAGACA
GAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.848

98.133

0.656

Multiple sequence alignment