Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ADJ80_RS10955 Genome accession   NZ_CP012067
Coordinates   2376079..2378160 (-) Length   693 a.a.
NCBI ID   WP_050694114.1    Uniprot ID   -
Organism   Aggregatibacter aphrophilus strain W10433     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2371079..2383160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ADJ80_RS10945 (ADJ80_10975) murI 2374722..2375558 (-) 837 WP_050694112.1 glutamate racemase -
  ADJ80_RS10950 (ADJ80_10980) - 2375589..2376086 (-) 498 WP_050694113.1 chorismate--pyruvate lyase family protein -
  ADJ80_RS10955 (ADJ80_10985) recG 2376079..2378160 (-) 2082 WP_050694114.1 ATP-dependent DNA helicase RecG Machinery gene
  ADJ80_RS10960 (ADJ80_10990) spoT 2378160..2380283 (-) 2124 WP_050694115.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  ADJ80_RS10965 (ADJ80_10995) rpoZ 2380328..2380594 (-) 267 WP_005701221.1 DNA-directed RNA polymerase subunit omega -
  ADJ80_RS10970 (ADJ80_11000) gmk 2380657..2381283 (-) 627 WP_050694116.1 guanylate kinase -
  ADJ80_RS10975 (ADJ80_11005) gap 2381533..2382537 (+) 1005 WP_050694117.1 type I glyceraldehyde-3-phosphate dehydrogenase -
  ADJ80_RS10980 (ADJ80_11010) - 2382640..2383056 (-) 417 WP_050694118.1 EamA family transporter -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 78098.46 Da        Isoelectric Point: 7.9129

>NTDB_id=131228 ADJ80_RS10955 WP_050694114.1 2376079..2378160(-) (recG) [Aggregatibacter aphrophilus strain W10433]
MHAQLLDAIPLTAISGVGAAIAEKLGKLGILNLQDLLFHLPLRYEDRTRITPIIDLRPEQYATIECVVQSTEVQFGRRPM
LMTYLSDGSAKLALRFFNFNAGMKNSLQPGARVKAFGEVRRGRFMAEMHHPEYQIIHDNKPLLLSETLTPIYPTTEGLKQ
TSLRKLIAQALQVLEKTPLAELLPKEFNPHPFDLKSAIQFLHNPPPDVSLETLEEGKHPAQQRLIFEELVAYNLAMQKVR
SGIQENFAEPLRAQSDLKQRFLAQLPFTPTHAQLRVTQEIEQDLQQNYPMMRLVQGDVGSGKTLVAALAALTAIDNGKQV
ALMAPTEILAEQHATNFRRWFEPLGIDVGWLAGKVKGKQRTVELERIKNGGVQMVVGTHALFQDEVAFHNLSLVIVDEQH
RFGVHQRLMLREKGNQAGVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTIAISEDRRADIIERVNRACT
EEKRQAYWVCTLIDESEVLEAQAAEAVAEDLRKILPHLRIGLVHGRMKPAEKQEIMQEFKDANLDLLVATTVIEVGVDVP
NASLMIIENAERLGLSQLHQLRGRVGRGTTASFCVLMYKPPLGKISQKRLQVMRDTQDGFVISEKDLEIRGPGEVLGTKQ
TGITEFKVANLMRDRKMLPTVQFYAKQLVQKYPQQAELLIRRWLNNREIYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=131228 ADJ80_RS10955 WP_050694114.1 2376079..2378160(-) (recG) [Aggregatibacter aphrophilus strain W10433]
ATGCACGCCCAATTATTAGATGCCATTCCACTCACTGCCATCTCCGGTGTTGGGGCTGCAATTGCAGAAAAACTAGGCAA
ATTGGGCATTTTAAATCTGCAAGATCTTCTATTTCATCTTCCTCTGCGTTATGAAGATCGTACCCGCATCACCCCCATAA
TTGATCTCCGACCTGAACAATATGCCACTATAGAATGTGTAGTGCAAAGCACGGAAGTGCAGTTTGGGCGCCGTCCAATG
TTAATGACATACCTTTCTGACGGCTCAGCAAAACTCGCGTTACGTTTTTTTAATTTTAACGCCGGGATGAAAAACAGTTT
ACAACCGGGGGCAAGGGTAAAAGCCTTTGGTGAGGTGCGTCGTGGGCGTTTTATGGCAGAAATGCACCATCCTGAATATC
AAATTATTCATGACAATAAACCTTTGCTTTTATCGGAAACGCTAACGCCGATTTATCCTACAACCGAAGGTTTAAAGCAA
ACTTCTTTGCGTAAACTTATCGCTCAGGCTCTACAGGTGTTGGAAAAAACACCATTAGCGGAATTATTGCCAAAGGAGTT
TAATCCGCACCCTTTTGATCTCAAATCAGCAATTCAATTTTTACACAATCCACCACCGGATGTTTCGTTGGAAACGTTAG
AAGAGGGTAAGCACCCTGCCCAACAGCGCCTAATTTTTGAGGAATTGGTGGCGTATAATTTAGCTATGCAAAAAGTGCGG
TCAGGAATTCAGGAGAATTTTGCAGAACCATTACGTGCGCAATCGGATTTAAAACAACGCTTTTTAGCACAATTACCTTT
CACACCGACCCATGCACAATTGCGCGTTACCCAAGAGATTGAACAGGATTTGCAACAAAATTATCCTATGATGCGCTTGG
TGCAGGGCGATGTAGGTTCAGGCAAAACATTGGTGGCGGCACTGGCGGCGTTAACGGCAATTGATAATGGTAAACAAGTG
GCGTTAATGGCACCAACAGAAATTTTAGCCGAACAGCATGCCACAAATTTCCGCCGTTGGTTTGAGCCGCTTGGCATTGA
TGTCGGTTGGCTGGCAGGTAAAGTCAAAGGCAAACAACGCACTGTTGAATTAGAACGGATTAAAAACGGCGGTGTACAAA
TGGTGGTGGGGACGCACGCCCTATTCCAAGATGAAGTTGCATTTCATAATCTGAGTTTGGTCATTGTGGATGAACAACAT
CGTTTTGGGGTACACCAACGTTTAATGTTGCGTGAAAAAGGCAATCAAGCGGGTGTTTATCCTCACCAACTTATTATGAC
CGCCACGCCGATTCCACGCACATTGGCCATGACTGTATATGCCGATTTGGACACCTCAATTATTGACGAACTGCCGCCCG
GACGCACGCCAATAACAACAATTGCCATCTCTGAAGATCGCCGTGCCGACATTATTGAGCGGGTTAACCGGGCTTGCACC
GAAGAAAAGCGGCAGGCTTATTGGGTCTGTACTTTGATTGATGAGTCAGAAGTATTGGAAGCGCAAGCCGCTGAAGCCGT
TGCCGAAGATCTTCGTAAAATTCTACCGCACTTACGTATCGGTCTGGTACATGGGCGAATGAAACCTGCTGAAAAACAAG
AAATTATGCAAGAGTTTAAGGATGCTAATTTGGATTTACTGGTCGCGACGACAGTGATTGAAGTGGGCGTGGATGTGCCA
AATGCCAGTTTAATGATTATTGAAAATGCCGAACGCCTAGGGTTATCGCAACTTCACCAATTACGCGGTCGGGTTGGGCG
TGGCACCACAGCTTCTTTTTGTGTATTAATGTATAAACCGCCATTAGGCAAAATTTCGCAGAAACGCCTGCAGGTAATGC
GGGACACGCAAGATGGCTTTGTCATTTCGGAAAAAGATTTAGAAATTCGAGGACCGGGCGAAGTGCTTGGCACTAAACAA
ACAGGCATTACCGAATTTAAAGTAGCAAATTTAATGCGAGATCGTAAAATGTTACCGACCGTGCAGTTTTATGCCAAACA
ACTCGTACAAAAATATCCACAGCAGGCAGAATTGCTCATTCGTCGCTGGCTGAATAATCGAGAGATTTATAGCAATGCCT
AA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(292-431)

RecG wedge domain (RecG_wedge)

(14-172)

Helicase conserved C-terminal domain (Helicase_C)

(479-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.926

97.403

0.486
  recG Bacillus subtilis subsp. subtilis str. 168

40.504

97.258

0.394
  recG/mmsA Streptococcus pneumoniae R6

40.455

95.238

0.385
  recG/mmsA Streptococcus pneumoniae R36A

40.455

95.238

0.385