Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   IX92_RS21010 Genome accession   NZ_CP009618
Coordinates   1080730..1082787 (-) Length   685 a.a.
NCBI ID   WP_235284495.1    Uniprot ID   -
Organism   Vibrio coralliilyticus strain RE98     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075730..1087787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS20995 (IX92_20995) clcA 1076805..1078205 (+) 1401 WP_043010429.1 H(+)/Cl(-) exchange transporter ClcA -
  IX92_RS21000 (IX92_21000) - 1078324..1079298 (+) 975 WP_006960883.1 TDT family transporter -
  IX92_RS21005 (IX92_21005) cqsA 1079514..1080695 (+) 1182 WP_043010430.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IX92_RS21010 (IX92_21010) cqsS 1080730..1082787 (-) 2058 WP_235284495.1 hybrid sensor histidine kinase/response regulator Regulator
  IX92_RS21015 (IX92_21015) - 1082907..1085948 (-) 3042 WP_043010432.1 SMC family ATPase -
  IX92_RS21020 (IX92_21020) - 1085958..1087088 (-) 1131 WP_043010433.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 685 a.a.        Molecular weight: 78714.14 Da        Isoelectric Point: 5.3061

>NTDB_id=130799 IX92_RS21010 WP_235284495.1 1080730..1082787(-) (cqsS) [Vibrio coralliilyticus strain RE98]
MTAVLESVRKVYQYAEPNLTLVGWMGLLGFPTYYYVWSYLFPQPYESLTLRLFCSFLFAIIAFRHALPKHIQRYMPQYYL
ISIAICLPYFFSYMMFMNEWSTIWAMSFMASVFLHVLLVHQTRIMLLQAAISLLFAFITVYGFNFSLAMEKIVWPYLPIF
LFTYVFGNLFYFRNQVEHESKVSIAKSFGAGIAHEMRNPLSALKASFDVLSSLLPDEKSKTAEFYSMSHQELTIAREVLS
DADEVIQNGNETIDLLLTSIDENRVSTSTFRKHSLKRVTEDSLSSFAYKSAKDKQAVQFKCEQDAEVFGSDTLIKYALYN
LLKNAFYYQNGNHFQITVEIKCSDKNSTIVFRDNGVGIAPEVLENIFKDFYTFGKSGSYGLGLPFCRKVMQALGGRISCR
SELNEWTEFTLTFPHYHSARVDYIKLDLMKSKSALYVGETSVIARLLNEQSFYKGFTLNTVDLELANSREEYEFEYDLIF
IDLDAVITSPDQLAALENKLHFTEARIVFLYDENNRYHNDIERHLTIYPVEKHRMSLEPGRVLDELFFESPEPDRNLLPR
KEVRVGKTIVIADDNHSLRTYTSILLEQQGFEVIQAQNGQEVLDKLQNNLVDLVLMDIEMPQLNGLDAANAIRSSDSEYA
NIPILGHTGDSTSVAIDKIHQSGMNDYIIKPAGTEVLLDKISNWI

Nucleotide


Download         Length: 2058 bp        

>NTDB_id=130799 IX92_RS21010 WP_235284495.1 1080730..1082787(-) (cqsS) [Vibrio coralliilyticus strain RE98]
ATGACAGCAGTTCTGGAATCAGTTCGCAAAGTATACCAGTATGCAGAACCAAACCTCACGCTCGTAGGTTGGATGGGGTT
GCTTGGCTTTCCAACTTACTACTACGTCTGGTCCTACTTATTCCCTCAGCCATACGAAAGCCTGACGCTCAGGCTCTTCT
GTTCATTCCTATTCGCAATAATTGCTTTTCGGCATGCGCTCCCTAAACACATACAGCGTTATATGCCGCAATATTATCTC
ATCTCGATAGCGATCTGCCTGCCGTACTTCTTTAGCTATATGATGTTTATGAACGAATGGTCGACGATATGGGCGATGTC
GTTTATGGCTTCAGTTTTTCTCCATGTTCTGCTTGTTCATCAAACACGAATTATGCTTCTGCAAGCCGCGATTTCGTTGT
TGTTTGCTTTTATTACCGTCTACGGATTTAACTTTAGTTTGGCCATGGAGAAGATTGTGTGGCCATATTTGCCGATTTTT
CTCTTCACATATGTGTTTGGGAACCTGTTTTACTTCCGTAATCAGGTTGAACATGAGAGTAAAGTATCTATAGCTAAGTC
CTTTGGCGCAGGAATCGCTCATGAAATGCGTAACCCGCTAAGTGCACTGAAAGCATCGTTTGACGTGCTAAGTTCCTTGT
TACCTGATGAAAAGTCCAAAACTGCTGAATTTTACTCAATGTCTCATCAGGAATTAACCATTGCGAGAGAAGTACTCAGT
GATGCGGATGAAGTGATTCAGAATGGTAATGAAACCATCGATCTTCTGTTAACTTCTATTGATGAAAACCGAGTATCAAC
GTCGACATTCAGAAAGCATTCTTTGAAACGTGTGACGGAAGATTCTCTATCCAGCTTCGCTTACAAAAGCGCAAAGGACA
AACAGGCTGTTCAGTTCAAGTGTGAACAGGATGCCGAAGTGTTTGGTAGTGATACGCTCATCAAGTATGCCTTGTATAAC
CTTCTCAAAAATGCCTTCTATTATCAGAATGGCAATCACTTCCAAATCACTGTTGAAATAAAGTGCTCCGATAAAAACAG
TACCATCGTATTTCGGGATAACGGCGTTGGTATCGCCCCTGAAGTGCTTGAAAACATTTTTAAAGATTTCTATACCTTTG
GTAAGTCAGGCAGTTATGGCCTCGGTTTACCATTTTGTCGAAAAGTGATGCAAGCTTTAGGTGGCAGAATCAGCTGTCGG
TCTGAGTTGAATGAATGGACTGAATTCACGCTGACGTTCCCTCATTATCATTCTGCGAGAGTCGATTATATAAAACTGGA
TCTAATGAAATCTAAATCAGCCCTCTATGTTGGGGAAACAAGTGTTATTGCACGGCTCCTCAATGAACAGTCTTTCTACA
AAGGCTTTACCCTTAACACCGTTGACCTCGAGCTGGCAAACAGTAGGGAAGAATACGAATTTGAATACGACTTGATATTC
ATCGATTTAGATGCAGTGATAACCTCACCTGATCAACTAGCAGCATTAGAGAATAAGCTTCACTTTACCGAAGCGAGAAT
CGTGTTTCTCTACGATGAGAACAACCGCTATCACAACGATATAGAAAGGCACCTCACCATTTACCCTGTTGAGAAGCATC
GAATGTCGCTAGAGCCAGGGCGTGTTTTGGACGAATTGTTCTTTGAGTCTCCTGAGCCTGACCGAAACTTACTCCCAAGA
AAAGAAGTCCGCGTGGGCAAAACGATTGTCATTGCAGACGACAATCATTCACTCCGTACTTACACGTCGATACTTTTAGA
ACAGCAGGGGTTTGAGGTGATTCAAGCTCAGAACGGGCAAGAAGTGTTAGATAAACTGCAGAACAACCTTGTCGATTTAG
TGCTAATGGATATTGAGATGCCACAACTGAATGGCCTTGATGCAGCGAATGCTATTCGTTCATCAGATAGTGAGTACGCC
AATATCCCGATTTTAGGCCATACTGGTGACTCTACATCTGTAGCTATCGATAAGATTCATCAGTCAGGGATGAATGATTA
TATTATTAAGCCTGCCGGTACAGAAGTACTGCTGGATAAAATATCGAACTGGATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(569-681)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(314-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

52.402

100

0.526

Multiple sequence alignment