Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   IX92_RS21005 Genome accession   NZ_CP009618
Coordinates   1079514..1080695 (+) Length   393 a.a.
NCBI ID   WP_043010430.1    Uniprot ID   A0AAJ3C5R9
Organism   Vibrio coralliilyticus strain RE98     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074514..1085695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX92_RS20990 (IX92_20990) - 1075420..1076397 (+) 978 WP_043010427.1 GTP-binding protein -
  IX92_RS20995 (IX92_20995) clcA 1076805..1078205 (+) 1401 WP_043010429.1 H(+)/Cl(-) exchange transporter ClcA -
  IX92_RS21000 (IX92_21000) - 1078324..1079298 (+) 975 WP_006960883.1 TDT family transporter -
  IX92_RS21005 (IX92_21005) cqsA 1079514..1080695 (+) 1182 WP_043010430.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  IX92_RS21010 (IX92_21010) cqsS 1080730..1082787 (-) 2058 WP_235284495.1 hybrid sensor histidine kinase/response regulator Regulator

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44056.24 Da        Isoelectric Point: 6.4971

>NTDB_id=130798 IX92_RS21005 WP_043010430.1 1079514..1080695(+) (cqsA) [Vibrio coralliilyticus strain RE98]
MNTLNHYPPLPDFINNKINFYLDDLINTNKNGKHLVLGKRPQSGDLVLQSNDYLDLSNNPDIIDHHISSIMARKNSPFMS
GIFLQDESSKPEVEEKLAKYVGFQSCLLSQSGWAANTALLQTICDSETNVYIDFFAHMSLWEGARIAGANIHPFMHNNVK
HLNKLINRHGPGIVLVDSVYSTIGTIAPLVELVLLAKEYGCAILVDESHSLGTHGKHGAGLLQSLKLSHQVDFMTASLAK
TFAYRAGAIWCNNRANDCVPFVAYPAIFSSTMLPHELDRLDKTLDIIKEQDKERAYLQELSEYLKNNLANIGLTIRSQSQ
IIAVETGDERNTEKVRDFFESQGIFGAVFCRPATTPNKNIIRFSLNSSTTKEEVNKIIRACQMAYELPDMYFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=130798 IX92_RS21005 WP_043010430.1 1079514..1080695(+) (cqsA) [Vibrio coralliilyticus strain RE98]
ATGAATACGCTTAACCATTACCCTCCTTTGCCAGATTTTATTAATAATAAAATAAATTTCTATCTGGATGACTTAATTAA
TACCAATAAGAACGGTAAGCATTTAGTTCTTGGAAAAAGGCCGCAAAGTGGCGACCTCGTTTTGCAAAGTAATGATTACC
TCGATTTATCCAATAACCCCGATATCATTGATCACCATATTAGTTCTATTATGGCACGTAAAAATAGCCCATTTATGTCA
GGTATATTTTTGCAGGATGAAAGCTCCAAGCCTGAAGTAGAAGAAAAACTCGCCAAGTATGTCGGGTTTCAATCTTGTTT
ACTTTCTCAATCTGGTTGGGCGGCCAATACTGCCTTGCTACAAACCATTTGTGACAGTGAAACAAATGTCTACATCGACT
TTTTTGCTCATATGTCTTTATGGGAAGGTGCGCGTATCGCCGGTGCTAACATCCATCCCTTTATGCATAATAACGTCAAG
CATTTGAATAAGTTGATAAACCGACATGGCCCTGGAATCGTTCTTGTCGATTCGGTTTACAGTACCATAGGCACCATTGC
CCCCTTAGTCGAGCTTGTGTTACTCGCGAAGGAATATGGCTGTGCGATATTAGTCGATGAATCACACTCCCTAGGTACTC
ACGGTAAACATGGCGCTGGTTTGTTACAAAGCTTAAAACTAAGTCATCAAGTCGACTTTATGACCGCCAGTTTAGCAAAA
ACGTTTGCCTATCGAGCTGGTGCAATTTGGTGCAACAATCGCGCTAATGATTGTGTTCCATTTGTAGCTTACCCCGCGAT
ATTTAGCTCTACGATGTTACCACATGAGTTGGATAGGCTCGATAAGACACTAGATATAATAAAAGAACAAGATAAAGAAA
GAGCTTACTTACAGGAGTTAAGCGAGTATTTGAAAAACAACCTGGCAAATATCGGGCTAACTATTCGAAGTCAATCGCAA
ATAATAGCGGTTGAAACGGGAGATGAACGTAACACCGAAAAAGTGAGAGACTTTTTTGAATCACAAGGCATATTTGGTGC
GGTATTTTGTCGGCCCGCAACGACACCTAATAAAAACATAATACGTTTTTCACTTAATAGCTCTACCACTAAAGAAGAAG
TAAATAAAATCATTCGCGCTTGTCAGATGGCTTACGAACTTCCAGATATGTATTTTATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(47-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

63.117

97.964

0.618

Multiple sequence alignment