Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | IX92_RS12940 | Genome accession | NZ_CP009617 |
| Coordinates | 2817507..2818376 (+) | Length | 289 a.a. |
| NCBI ID | WP_043009231.1 | Uniprot ID | A0AAN0SD39 |
| Organism | Vibrio coralliilyticus strain RE98 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2812507..2823376
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IX92_RS12920 (IX92_12920) | nadC | 2813009..2813896 (+) | 888 | WP_021458291.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| IX92_RS12925 (IX92_12925) | - | 2814124..2814564 (+) | 441 | WP_043009222.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| IX92_RS12930 (IX92_12930) | pilB | 2814567..2816213 (+) | 1647 | WP_043009226.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| IX92_RS12935 (IX92_12935) | - | 2816222..2817457 (+) | 1236 | WP_043009229.1 | type II secretion system F family protein | - |
| IX92_RS12940 (IX92_12940) | pilD | 2817507..2818376 (+) | 870 | WP_043009231.1 | A24 family peptidase | Machinery gene |
| IX92_RS12945 (IX92_12945) | coaE | 2818378..2818986 (+) | 609 | WP_043009232.1 | dephospho-CoA kinase | - |
| IX92_RS12950 (IX92_12950) | zapD | 2819020..2819760 (+) | 741 | WP_043009234.1 | cell division protein ZapD | - |
| IX92_RS12955 (IX92_12955) | yacG | 2819812..2820006 (+) | 195 | WP_006958142.1 | DNA gyrase inhibitor YacG | - |
| IX92_RS12960 (IX92_12960) | rplS | 2820252..2820605 (-) | 354 | WP_006958143.1 | 50S ribosomal protein L19 | - |
| IX92_RS12965 (IX92_12965) | trmD | 2820647..2821390 (-) | 744 | WP_043009236.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| IX92_RS12970 (IX92_12970) | rimM | 2821418..2821966 (-) | 549 | WP_031343344.1 | ribosome maturation factor RimM | - |
| IX92_RS12975 (IX92_12975) | rpsP | 2821996..2822244 (-) | 249 | WP_005438039.1 | 30S ribosomal protein S16 | - |
Sequence
Protein
Download Length: 289 a.a. Molecular weight: 32635.67 Da Isoelectric Point: 6.2199
>NTDB_id=130782 IX92_RS12940 WP_043009231.1 2817507..2818376(+) (pilD) [Vibrio coralliilyticus strain RE98]
MDLFNYYPWLFPTLATIFGLIIGSFLNVVIHRLPQMMEREWRHECAESFPEYGIEPPHGIYNLSIPRSTCPSCKTQIRNI
DNIPVISWLLLRGKCRACQAKISPRYPLIELLSGTMCFAIAYQFELSVFAIALLFFTFVLIAATFIDFDTMLLPDQLTFP
LIWSGIALALLDFSPVSLQDSVIGAMAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVIVLLSSLVGL
VFGIIQLRLQKQGIDKAFPFGPYLAIAGWVSAMWGENIINWYFTQILGI
MDLFNYYPWLFPTLATIFGLIIGSFLNVVIHRLPQMMEREWRHECAESFPEYGIEPPHGIYNLSIPRSTCPSCKTQIRNI
DNIPVISWLLLRGKCRACQAKISPRYPLIELLSGTMCFAIAYQFELSVFAIALLFFTFVLIAATFIDFDTMLLPDQLTFP
LIWSGIALALLDFSPVSLQDSVIGAMAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVIVLLSSLVGL
VFGIIQLRLQKQGIDKAFPFGPYLAIAGWVSAMWGENIINWYFTQILGI
Nucleotide
Download Length: 870 bp
>NTDB_id=130782 IX92_RS12940 WP_043009231.1 2817507..2818376(+) (pilD) [Vibrio coralliilyticus strain RE98]
ATGGATCTGTTTAACTATTACCCGTGGTTGTTTCCCACACTTGCCACTATTTTTGGCCTGATCATTGGCAGTTTTCTCAA
CGTAGTAATCCACCGTTTGCCACAAATGATGGAGCGAGAGTGGCGACACGAGTGTGCAGAAAGCTTCCCAGAATACGGTA
TCGAACCTCCACACGGCATCTATAACCTCAGTATTCCTCGCTCCACCTGTCCAAGCTGTAAAACGCAAATCCGTAACATC
GACAATATCCCGGTTATTAGCTGGCTGCTTTTGCGTGGTAAATGTCGTGCCTGCCAAGCAAAAATAAGCCCTCGCTACCC
GCTGATCGAGCTGCTTTCAGGCACAATGTGCTTTGCTATCGCTTATCAGTTTGAACTTAGCGTCTTTGCCATCGCCCTGC
TATTTTTTACCTTCGTCCTGATTGCGGCAACATTCATTGATTTTGATACCATGCTGCTGCCAGACCAGCTTACCTTTCCG
CTAATTTGGTCGGGTATTGCTCTTGCCTTATTAGACTTCAGCCCGGTCTCCCTGCAAGATTCTGTTATTGGGGCTATGGC
GGGTTATTTATGTTTATGGTCTGTCTACTGGGGCTTCAAGTTACTCACTGGTAAAGAAGGCATGGGCTATGGAGATTTCA
AACTTCTTGCCGCACTAGGCGCTTGGTTAGGTTGGCAGTACTTGCCTGTTATCGTGTTACTTTCCTCATTAGTCGGCCTA
GTCTTTGGCATTATTCAACTGCGACTACAAAAGCAAGGTATAGATAAAGCCTTTCCATTCGGCCCTTATCTCGCTATTGC
GGGATGGGTCAGTGCCATGTGGGGAGAGAACATCATAAATTGGTACTTCACACAAATCTTGGGGATCTGA
ATGGATCTGTTTAACTATTACCCGTGGTTGTTTCCCACACTTGCCACTATTTTTGGCCTGATCATTGGCAGTTTTCTCAA
CGTAGTAATCCACCGTTTGCCACAAATGATGGAGCGAGAGTGGCGACACGAGTGTGCAGAAAGCTTCCCAGAATACGGTA
TCGAACCTCCACACGGCATCTATAACCTCAGTATTCCTCGCTCCACCTGTCCAAGCTGTAAAACGCAAATCCGTAACATC
GACAATATCCCGGTTATTAGCTGGCTGCTTTTGCGTGGTAAATGTCGTGCCTGCCAAGCAAAAATAAGCCCTCGCTACCC
GCTGATCGAGCTGCTTTCAGGCACAATGTGCTTTGCTATCGCTTATCAGTTTGAACTTAGCGTCTTTGCCATCGCCCTGC
TATTTTTTACCTTCGTCCTGATTGCGGCAACATTCATTGATTTTGATACCATGCTGCTGCCAGACCAGCTTACCTTTCCG
CTAATTTGGTCGGGTATTGCTCTTGCCTTATTAGACTTCAGCCCGGTCTCCCTGCAAGATTCTGTTATTGGGGCTATGGC
GGGTTATTTATGTTTATGGTCTGTCTACTGGGGCTTCAAGTTACTCACTGGTAAAGAAGGCATGGGCTATGGAGATTTCA
AACTTCTTGCCGCACTAGGCGCTTGGTTAGGTTGGCAGTACTTGCCTGTTATCGTGTTACTTTCCTCATTAGTCGGCCTA
GTCTTTGGCATTATTCAACTGCGACTACAAAAGCAAGGTATAGATAAAGCCTTTCCATTCGGCCCTTATCTCGCTATTGC
GGGATGGGTCAGTGCCATGTGGGGAGAGAACATCATAAATTGGTACTTCACACAAATCTTGGGGATCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio campbellii strain DS40M4 |
76.125 |
100 |
0.761 |
| pilD | Vibrio cholerae strain A1552 |
74.653 |
99.654 |
0.744 |
| pilD | Acinetobacter baumannii D1279779 |
51.661 |
93.772 |
0.484 |
| pilD | Acinetobacter nosocomialis M2 |
51.661 |
93.772 |
0.484 |
| pilD | Neisseria gonorrhoeae MS11 |
47.735 |
99.308 |
0.474 |