Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SABE62_RS09260 Genome accession   NZ_CP012013
Coordinates   1837525..1838127 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain Be62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1832525..1843127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SABE62_RS09240 (SABE62_01905) yajC 1834021..1834281 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  SABE62_RS09245 (SABE62_01906) tgt 1834300..1835439 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  SABE62_RS09250 (SABE62_01907) queA 1835462..1836487 (-) 1026 WP_001019172.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SABE62_RS09255 (SABE62_01908) ruvB 1836489..1837493 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  SABE62_RS09260 (SABE62_01909) ruvA 1837525..1838127 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  SABE62_RS09265 (SABE62_01910) - 1838141..1838596 (-) 456 WP_000368902.1 ACT domain-containing protein -
  SABE62_RS09270 (SABE62_01911) obgE 1838609..1839901 (-) 1293 WP_020444729.1 GTPase ObgE -
  SABE62_RS09275 (SABE62_01913) - 1840328..1841932 (+) 1605 WP_000284571.1 IS1182-like element IS1182 family transposase -
  SABE62_RS09280 (SABE62_01914) rpmA 1842047..1842331 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  SABE62_RS09285 (SABE62_01915) - 1842343..1842663 (-) 321 WP_016187883.1 ribosomal-processing cysteine protease Prp -
  SABE62_RS09290 (SABE62_01916) rplU 1842669..1842977 (-) 309 WP_000457385.1 50S ribosomal protein L21 -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=130494 SABE62_RS09260 WP_000271547.1 1837525..1838127(-) (ruvA) [Staphylococcus aureus strain Be62]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=130494 SABE62_RS09260 WP_000271547.1 1837525..1838127(-) (ruvA) [Staphylococcus aureus strain Be62]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425