Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   TZ57_RS12820 Genome accession   NZ_CP011938
Coordinates   2581720..2582457 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain C43(DE3)     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2576720..2587457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TZ57_RS12805 (TZ57_12810) clpC 2577174..2579747 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  TZ57_RS12810 (TZ57_12815) yfiH 2579877..2580608 (-) 732 WP_000040127.1 purine nucleoside phosphorylase YfiH -
  TZ57_RS12815 (TZ57_12820) rluD 2580605..2581585 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  TZ57_RS12820 (TZ57_12825) comL 2581720..2582457 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  TZ57_RS12830 (TZ57_12835) raiA 2582728..2583069 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  TZ57_RS24915 pheL 2583173..2583220 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  TZ57_RS12835 (TZ57_12840) pheA 2583318..2584478 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  TZ57_RS12840 (TZ57_12845) tyrA 2584521..2585642 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  TZ57_RS12845 (TZ57_12850) aroF 2585653..2586723 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  TZ57_RS12850 (TZ57_12855) yfiL 2586933..2587298 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=129892 TZ57_RS12820 WP_000197686.1 2581720..2582457(+) (comL) [Escherichia coli strain C43(DE3)]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=129892 TZ57_RS12820 WP_000197686.1 2581720..2582457(+) (comL) [Escherichia coli strain C43(DE3)]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment