Detailed information NTG0129671

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: ABU16_RS19005
• Genome accession: NZ_CP011882
• Coordinates: 3649591..3650196 (-)
• Length: 201 a.a.
• NCBI ID: WP_003229717.1
• Uniprot ID: O05392
• Organism: Bacillus subtilis strain TO-A JPC
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 3644591..3655196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ABU16_RS18975 (ABU16_3778)	-	3645404..3645793 (+)	390	WP_004398667.1	TIGR04086 family membrane protein	-
ABU16_RS18980 (ABU16_3779)	yajC	3645850..3646116 (-)	267	WP_004398708.1	preprotein translocase subunit YajC	-
ABU16_RS18985 (ABU16_3780)	tgt	3646153..3647298 (-)	1146	WP_003229725.1	tRNA guanosine(34) transglycosylase Tgt	-
ABU16_RS18990 (ABU16_3781)	queA	3647325..3648353 (-)	1029	WP_003229723.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
ABU16_RS18995 (ABU16_3782)	yrzS	3648383..3648583 (-)	201	WP_003222669.1	DUF2905 domain-containing protein	-
ABU16_RS19000 (ABU16_3783)	ruvB	3648576..3649580 (-)	1005	WP_003229718.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
ABU16_RS19005 (ABU16_3784)	ruvA	3649591..3650196 (-)	606	WP_003229717.1	Holliday junction branch migration protein RuvA	Machinery gene
ABU16_RS19010 (ABU16_3785)	bofC	3650335..3650847 (-)	513	WP_003229715.1	sporulation cell-cell signaling protein BofC	-
ABU16_RS19015 (ABU16_3786)	csbX	3650895..3652202 (-)	1308	WP_003246197.1	MFS transporter	-
ABU16_RS19020 (ABU16_3787)	iolG	3652273..3653298 (-)	1026	WP_004398990.1	inositol 2-dehydrogenase	-
ABU16_RS19025 (ABU16_3788)	yrzF	3653536..3654183 (+)	648	WP_003246159.1	phosphotransferase	-
ABU16_RS22590 (ABU16_3789)	-	3654229..3654351 (-)	123	WP_003229707.1	hypothetical protein	-
ABU16_RS22595 (ABU16_3790)	yrzH	3654436..3654726 (+)	291	WP_003246047.1	DUF5412 family protein	-
ABU16_RS22195 (ABU16_3791)	-	3654733..3654873 (+)	141	WP_004398683.1	hypothetical protein	-

Sequence

Protein

• Length: 201 a.a.
• Molecular weight: 22584.08 Da
• Isoelectric Point: 5.4072

>NTDB_id=129671 ABU16_RS19005 WP_003229717.1 3649591..3650196(-) (ruvA) [Bacillus subtilis strain TO-A JPC]
MIEFVKGTIDYVSPQYIVIENGGIGYQIFTPNPFIYKERSQETIFTYHHIREDAFSLYGFSTREEKALFTKLLNVTGIGP
KGALAILGSGDPGAVIQAIENEDEAFLVKFPGVGKKTARQIILDLKGKLADVVPEMIENLFNHEERLEKQTAETALEEAL
EALRVLGYAEKEIKKVLPHLKEEIGLTTDQYVKKALQKLLK

Nucleotide

• Length: 606 bp

>NTDB_id=129671 ABU16_RS19005 WP_003229717.1 3649591..3650196(-) (ruvA) [Bacillus subtilis strain TO-A JPC]
GTGATTGAATTTGTTAAAGGGACGATTGATTATGTATCTCCCCAATATATTGTCATAGAGAACGGCGGCATCGGCTATCA
GATTTTCACGCCGAATCCGTTTATATATAAGGAGAGAAGCCAAGAAACGATTTTTACATACCATCATATCAGAGAGGATG
CTTTTTCGCTTTATGGTTTTTCAACAAGAGAGGAGAAGGCGCTCTTTACAAAGCTGTTAAACGTGACCGGAATTGGCCCG
AAAGGAGCACTTGCCATCTTGGGCTCGGGTGATCCCGGAGCGGTCATCCAAGCAATTGAAAATGAAGATGAAGCTTTTTT
GGTCAAGTTTCCTGGAGTAGGAAAGAAAACCGCACGCCAGATTATTCTAGATTTAAAAGGAAAGCTGGCAGATGTTGTGC
CTGAAATGATTGAAAATCTGTTTAATCATGAAGAAAGGCTTGAAAAGCAAACAGCGGAAACGGCTCTTGAAGAAGCACTT
GAAGCCCTCAGGGTTCTCGGATATGCTGAAAAAGAAATCAAAAAGGTGCTTCCTCACCTTAAAGAAGAAATTGGGCTGAC
AACAGACCAATATGTGAAAAAAGCATTACAAAAACTATTAAAGTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (155-199)

• RuvA N terminal domain (RuvA_N) (1-59)

• Helix-hairpin-helix domain (HHH_5) (69-126)

3D structure

• AlphaFold DB: O05392

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Bacillus subtilis subsp. subtilis str. 168	100	100	1
ruvA	Streptococcus pneumoniae TIGR4	39.806	100	0.408
ruvA	Streptococcus pneumoniae R6	39.806	100	0.408
ruvA	Streptococcus pneumoniae D39	39.806	100	0.408