Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   LG36_RS06780 Genome accession   NZ_CP009472
Coordinates   1416662..1417984 (+) Length   440 a.a.
NCBI ID   WP_038601228.1    Uniprot ID   A0A9X4NDP7
Organism   Lactococcus lactis strain AI06     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1411662..1422984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LG36_RS06755 (LG36_1283) glyQ 1412180..1413133 (-) 954 WP_003130667.1 glycine--tRNA ligase subunit alpha -
  LG36_RS06760 (LG36_1284) - 1413418..1414164 (-) 747 WP_038601216.1 bifunctional metallophosphatase/5'-nucleotidase -
  LG36_RS06765 (LG36_1285) - 1414278..1415297 (-) 1020 WP_038601219.1 DUF475 domain-containing protein -
  LG36_RS06770 (LG36_1286) - 1415345..1415842 (-) 498 WP_038601222.1 VanZ family protein -
  LG36_RS06775 (LG36_1287) - 1415976..1416605 (-) 630 WP_038601225.1 YigZ family protein -
  LG36_RS06780 (LG36_1288) comFA 1416662..1417984 (+) 1323 WP_038601228.1 DEAD/DEAH box helicase Machinery gene
  LG36_RS06785 (LG36_1289) - 1417981..1418631 (+) 651 WP_038601231.1 ComF family protein -
  LG36_RS06790 (LG36_1290) - 1418666..1419244 (-) 579 WP_038601233.1 nucleotidyltransferase family protein -
  LG36_RS06795 (LG36_1291) - 1419258..1419713 (-) 456 WP_038601235.1 diacylglycerol kinase family protein -
  LG36_RS06800 (LG36_1292) ybeY 1419697..1420185 (-) 489 WP_003130652.1 rRNA maturation RNase YbeY -
  LG36_RS06805 (LG36_1293) - 1420337..1420816 (-) 480 WP_038601238.1 NUDIX hydrolase -
  LG36_RS06810 (LG36_1294) - 1420874..1421842 (-) 969 WP_080739863.1 PhoH family protein -

Sequence

Protein


Download         Length: 440 a.a.        Molecular weight: 50257.87 Da        Isoelectric Point: 10.1468

>NTDB_id=129640 LG36_RS06780 WP_038601228.1 1416662..1417984(+) (comFA) [Lactococcus lactis strain AI06]
MSTNQEKLFGRLLLKNDILQLIKSTDKISVSKIFSNFLIETTVKSILGMTSITSNKIKCNRCGTFHIKNAVKLPIGAFYC
PSCIQLGRVRSDEFLYFLPQKIFPKKSYINWSGKLTENQKSISNALCQEINSHQQIIVQAVTGAGKTEMIYQVIEQILEK
GGVVGLASPRIDVCLELHQRLSRDFSCKIPLLYHDGDSYFRAPLIIMTSHQLLRFKEAFDLLIIDEVDAFPFRDNEMLYF
AAEKARKIEGNLIYLTATSTDKLEKDIKKQKLYPLFLPRRFHNFPLVVPKFFWKNKFDKKLIEQRNSGFPLLIFAAEIES
GQEFAKQLQLKFPKEKIAFVASTTKDRLEIVKAFRNKEITILIATSILERGVTFPNVDVFVINSEHPNFTKSALIQMAGR
VGRSPERPTGLVSFFHYGKSKAMCQAVREIKKMNQLGGFS

Nucleotide


Download         Length: 1323 bp        

>NTDB_id=129640 LG36_RS06780 WP_038601228.1 1416662..1417984(+) (comFA) [Lactococcus lactis strain AI06]
ATGAGCACTAATCAAGAAAAGTTATTTGGCCGTTTATTATTAAAAAATGATATTTTACAACTTATAAAAAGTACTGACAA
GATTTCTGTCAGTAAAATTTTTAGTAATTTTTTGATAGAAACAACGGTAAAATCAATTTTGGGGATGACTTCAATTACTT
CCAATAAAATAAAATGCAACCGCTGTGGGACTTTTCATATAAAAAATGCTGTCAAACTTCCAATTGGTGCATTTTACTGT
CCAAGTTGTATTCAATTAGGTCGAGTCCGCTCCGATGAATTCTTGTACTTTCTTCCACAAAAGATTTTCCCAAAGAAATC
ATATATAAACTGGTCTGGAAAACTGACAGAGAATCAAAAATCAATTTCAAATGCCCTTTGTCAGGAAATTAATTCTCATC
AGCAAATAATTGTCCAAGCTGTGACTGGGGCTGGAAAAACTGAAATGATTTATCAAGTCATTGAGCAAATTTTAGAAAAA
GGTGGAGTTGTTGGTCTAGCTAGTCCAAGAATTGATGTTTGTCTTGAACTTCATCAGCGATTATCACGTGATTTTTCCTG
TAAGATTCCACTCTTATATCATGATGGCGACAGCTATTTCCGAGCTCCATTAATAATAATGACCAGTCATCAGCTTTTAC
GCTTCAAGGAAGCTTTTGATTTGCTGATTATTGATGAGGTTGATGCCTTTCCCTTTAGAGATAATGAAATGCTTTATTTT
GCGGCAGAAAAAGCAAGAAAAATAGAAGGGAATTTAATATATTTGACCGCAACTTCTACTGACAAACTTGAAAAAGATAT
AAAAAAGCAAAAACTCTATCCTTTGTTTCTGCCGCGTCGTTTTCACAATTTTCCTTTAGTGGTGCCTAAATTTTTTTGGA
AAAATAAATTTGATAAGAAATTAATTGAGCAAAGAAATAGTGGCTTTCCACTTCTAATTTTTGCTGCTGAAATTGAATCT
GGACAAGAATTTGCAAAACAACTACAACTAAAATTTCCTAAAGAAAAAATTGCTTTCGTTGCTTCAACAACAAAAGATAG
ATTGGAAATTGTTAAAGCTTTTAGAAATAAAGAAATTACTATTTTAATAGCGACATCAATTCTTGAACGGGGAGTCACTT
TTCCAAATGTTGATGTTTTTGTCATCAACAGTGAGCACCCAAACTTCACTAAATCTGCACTGATACAAATGGCTGGACGT
GTAGGTCGTAGTCCTGAGCGTCCAACAGGCTTAGTTAGTTTTTTTCATTACGGAAAATCCAAAGCAATGTGTCAGGCAGT
TAGAGAAATCAAAAAAATGAACCAACTGGGAGGTTTTTCATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(114-232)

Helicase conserved C-terminal domain (Helicase_C)

(300-403)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Lactococcus lactis subsp. cremoris KW2

74.75

90.909

0.68
  comFA/cflA Streptococcus pneumoniae Rx1

53.015

90.455

0.48
  comFA/cflA Streptococcus pneumoniae D39

53.015

90.455

0.48
  comFA/cflA Streptococcus pneumoniae R6

53.015

90.455

0.48
  comFA/cflA Streptococcus pneumoniae TIGR4

53.015

90.455

0.48
  comFA/cflA Streptococcus mitis SK321

52.513

90.455

0.475
  comFA/cflA Streptococcus mitis NCTC 12261

51.508

90.455

0.466
  comFA Bacillus subtilis subsp. subtilis str. 168

37.029

100

0.38

Multiple sequence alignment