Detailed information
Bioinformatically predicted
Overview
| Name | lrpC | Type | Machinery gene |
| Locus tag | ABU16_RS07280 | Genome accession | NZ_CP011882 |
| Coordinates | 1428685..1429119 (+) | Length | 144 a.a. |
| NCBI ID | WP_003246585.1 | Uniprot ID | A0ABU0V5G7 |
| Organism | Bacillus subtilis strain TO-A JPC | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 1423685..1434119
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ABU16_RS07250 (ABU16_1429) | ydaD | 1424336..1425196 (+) | 861 | WP_003246648.1 | SDR family oxidoreductase | - |
| ABU16_RS07255 (ABU16_1430) | lyxE | 1425212..1425715 (+) | 504 | WP_003234400.1 | D-lyxose ketol-isomerase | - |
| ABU16_RS07260 (ABU16_1431) | ydaF | 1425801..1426352 (+) | 552 | WP_003246691.1 | GNAT family protein | - |
| ABU16_RS07265 (ABU16_1432) | ydaG | 1426430..1426852 (+) | 423 | WP_003234396.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| ABU16_RS07270 (ABU16_1433) | amj | 1427358..1428167 (+) | 810 | WP_003234394.1 | lipid II flippase Amj | - |
| ABU16_RS07275 (ABU16_1434) | ydzA | 1428211..1428501 (-) | 291 | WP_003246602.1 | DUF3817 domain-containing protein | - |
| ABU16_RS07280 (ABU16_1435) | lrpC | 1428685..1429119 (+) | 435 | WP_003246585.1 | transcriptional regulator LrpC | Machinery gene |
| ABU16_RS07285 (ABU16_1436) | topB | 1429184..1431367 (+) | 2184 | WP_003246684.1 | DNA topoisomerase III | - |
| ABU16_RS07290 (ABU16_1437) | epsJ | 1431570..1432658 (+) | 1089 | WP_003246551.1 | lipoprotein | - |
| ABU16_RS07295 (ABU16_1438) | epsK | 1432639..1433490 (+) | 852 | WP_003246541.1 | cyclic-di-GMP receptor EpsK | - |
Sequence
Protein
Download Length: 144 a.a. Molecular weight: 16450.03 Da Isoelectric Point: 7.7037
>NTDB_id=129583 ABU16_RS07280 WP_003246585.1 1428685..1429119(+) (lrpC) [Bacillus subtilis strain TO-A JPC]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG
Nucleotide
Download Length: 435 bp
>NTDB_id=129583 ABU16_RS07280 WP_003246585.1 1428685..1429119(+) (lrpC) [Bacillus subtilis strain TO-A JPC]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTATGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| lrpC | Bacillus subtilis subsp. subtilis str. 168 |
100 |
100 |
1 |