Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   FORC16_RS09865 Genome accession   NZ_CP011775
Coordinates   2170296..2172449 (-) Length   717 a.a.
NCBI ID   WP_230826174.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_016     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2165296..2177449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC16_RS09840 (FORC16_1952) - 2165630..2166418 (-) 789 WP_060531135.1 GGDEF domain-containing protein -
  FORC16_RS09845 (FORC16_1953) kdsB 2166590..2167345 (-) 756 WP_011150831.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FORC16_RS09850 (FORC16_1954) - 2167345..2167524 (-) 180 WP_011079973.1 Trm112 family protein -
  FORC16_RS09855 (FORC16_1955) lpxK 2167505..2168512 (-) 1008 WP_011150832.1 tetraacyldisaccharide 4'-kinase -
  FORC16_RS09860 (FORC16_1956) msbA 2168512..2170263 (-) 1752 WP_039554277.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  FORC16_RS09865 (FORC16_1957) comEC 2170296..2172449 (-) 2154 WP_230826174.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  FORC16_RS09870 (FORC16_1958) - 2172554..2173063 (+) 510 WP_011079969.1 DUF2062 domain-containing protein -
  FORC16_RS09875 (FORC16_1959) lolE 2173259..2174503 (-) 1245 WP_060531132.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  FORC16_RS09880 (FORC16_1960) lolD 2174515..2175198 (-) 684 WP_011079967.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  FORC16_RS09885 (FORC16_1961) lolC 2175191..2176396 (-) 1206 WP_060531130.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  FORC16_RS09890 (FORC16_1962) - 2176660..2177229 (+) 570 WP_060531128.1 hypothetical protein -

Sequence

Protein


Download         Length: 717 a.a.        Molecular weight: 80391.85 Da        Isoelectric Point: 9.0286

>NTDB_id=129343 FORC16_RS09865 WP_230826174.1 2170296..2172449(-) (comEC) [Vibrio vulnificus strain FORC_016]
MLIVVAIFIIIVRKTCRYLLGVTIALLIAISAGNLMQWQVKTLFQAGENITINGAVDSPFKQISHGYEGVVSITAINNSH
LVWTLRPKVRLISPIPLGQGDQIVAHVTLKRVYGLLNEAGFDAERFAVSQGIVGRATIDDSRSWRLVSVKGGRQALIEKA
QQLLVRSDHTGYLLGLSFGLRDDITDEQWQQLKQSGLIHLLSISGLHIGMAFGIGYWLGHWLRFGRLTLVWLPLAIGLSL
SWSYAWLAGFTLPTQRAIVFVTLVALFSFTSGQVGRWTVLLLALAFCLAMSPFSALSISLWLSFLAVSCVFLVVDLRESS
SSWIGKMKSVFCIQGMLLLYLAPVTAYFFSGLSLAAWLYNFLFIPWFSLVVVPAIFVALVLTALNIMSAARMLWQLADLS
LWPLTYAMPYAHLGWWGLSSFQVVLVALCALAVMLRHVIRWQLSAVLIILLSTSSLLIHPLSRTRIDVLDVGHGLAVLIE
KDGKTLLYDTGKSWHGGSIAQQVIEPILLSRGSRSLDGVIISHQDDDHAGGLPYLQQNMRPQWVRSSHYLSDFPCVKGHN
FEWQGLKMTVLWPPRQVTRAYNPHSCVIRMEDEENQFSFLMTGDIDALAEWILIRESEQLNSDVVLVPHHGSQTSSIEPF
VNAVQAGVAIASLAKGNQWGMPQPQVVETYRRHRTQWFDTGELGQITLYVEQRNWRIVSRRDTFNAWYRQMLRNQVE

Nucleotide


Download         Length: 2154 bp        

>NTDB_id=129343 FORC16_RS09865 WP_230826174.1 2170296..2172449(-) (comEC) [Vibrio vulnificus strain FORC_016]
ATGCTAATTGTTGTTGCCATCTTTATCATTATTGTGCGTAAAACGTGTCGTTACTTGCTGGGGGTGACCATCGCACTTTT
GATTGCCATTTCGGCTGGTAACCTTATGCAATGGCAAGTAAAGACCCTATTTCAGGCAGGGGAGAATATTACCATAAATG
GCGCCGTTGACAGCCCTTTTAAGCAAATAAGTCACGGTTATGAAGGTGTTGTTAGCATCACAGCAATAAATAATAGTCAT
TTAGTGTGGACCCTGCGACCTAAAGTGCGTTTGATCTCACCCATTCCTCTTGGGCAGGGGGATCAAATCGTAGCGCATGT
GACTCTAAAACGAGTCTATGGGTTACTCAATGAAGCAGGGTTTGATGCCGAACGTTTTGCTGTCAGCCAAGGTATCGTTG
GACGGGCAACTATTGATGATTCTCGCTCTTGGCGTTTGGTTTCCGTGAAGGGAGGGCGACAAGCGCTGATCGAAAAAGCT
CAGCAGCTACTGGTTCGTAGCGATCATACCGGTTATTTACTTGGCTTAAGCTTTGGTCTTCGCGACGACATTACCGACGA
GCAATGGCAGCAACTCAAGCAAAGTGGTTTGATACATCTACTTTCTATCTCAGGGCTGCACATTGGTATGGCTTTTGGTA
TCGGTTACTGGCTCGGGCATTGGTTGCGTTTTGGACGGCTTACTCTTGTTTGGCTGCCGTTGGCTATTGGACTGAGTCTC
AGTTGGAGTTATGCGTGGCTGGCTGGTTTTACTCTGCCAACGCAAAGAGCCATTGTCTTTGTCACGTTAGTCGCCTTGTT
CTCGTTTACGTCGGGGCAAGTCGGTCGCTGGACAGTCTTGCTATTGGCTCTGGCCTTCTGTCTTGCGATGTCGCCATTTT
CTGCCCTTTCTATCAGTCTCTGGCTCTCGTTTCTTGCTGTCAGTTGCGTCTTTCTGGTGGTTGATCTCCGTGAGTCGTCT
TCATCTTGGATTGGCAAAATGAAAAGCGTATTTTGCATCCAAGGTATGCTGCTGCTTTATCTCGCACCTGTGACTGCTTA
CTTCTTTTCCGGTTTGAGTTTAGCCGCCTGGCTGTACAACTTCCTATTTATCCCCTGGTTTAGCTTGGTGGTGGTGCCTG
CCATATTTGTCGCACTCGTGCTGACGGCGCTGAATATTATGTCTGCGGCCAGGATGCTGTGGCAGTTAGCGGATTTAAGT
TTATGGCCATTAACTTACGCTATGCCTTACGCCCACTTAGGCTGGTGGGGACTCTCCTCATTTCAGGTGGTGTTGGTCGC
GTTGTGCGCGCTCGCTGTGATGCTGAGACATGTTATTCGCTGGCAACTCTCTGCTGTTCTGATCATTTTGCTCAGCACTT
CTTCACTGTTGATTCATCCTCTTTCTCGCACCCGAATTGACGTTTTAGATGTTGGCCATGGGCTCGCCGTATTGATTGAG
AAAGACGGTAAAACACTGCTTTATGACACCGGAAAGTCTTGGCATGGCGGCAGTATTGCACAGCAAGTGATTGAGCCTAT
TTTATTGAGTCGGGGTAGTAGAAGCCTTGATGGGGTTATCATCAGTCATCAAGATGACGATCATGCAGGCGGCTTGCCCT
ATTTGCAGCAAAACATGCGCCCACAATGGGTAAGGAGTAGTCATTACTTGAGTGATTTTCCGTGTGTTAAAGGTCACAAC
TTTGAGTGGCAAGGGCTCAAAATGACCGTGCTTTGGCCGCCAAGGCAAGTGACTCGTGCCTACAATCCCCATTCCTGTGT
GATTCGTATGGAGGATGAGGAAAATCAGTTTTCATTTTTGATGACTGGCGATATTGACGCTTTGGCTGAGTGGATCCTGA
TTCGTGAATCTGAACAGCTAAACAGCGATGTGGTATTGGTGCCGCATCATGGCAGTCAAACTTCGTCGATTGAGCCTTTT
GTGAACGCCGTCCAGGCAGGTGTGGCAATCGCCTCGTTGGCAAAAGGAAATCAGTGGGGGATGCCACAACCGCAAGTGGT
CGAGACTTATCGACGACATCGCACGCAGTGGTTTGATACTGGTGAGCTGGGTCAGATAACGTTGTATGTGGAACAGAGAA
ACTGGCGAATCGTCTCAAGACGCGACACTTTCAACGCTTGGTATAGGCAGATGCTGCGTAACCAAGTAGAATAG

Domains

Predicted by InterProScan.

Competence protein (Competence)

(176-435)

Metallo-beta-lactamase superfamily (Lactamase_B)

(471-650)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio campbellii strain DS40M4

44.875

100

0.452
  comEC Vibrio parahaemolyticus RIMD 2210633

45.869

97.908

0.449
  comEC Vibrio cholerae strain A1552

42.659

100

0.43

Multiple sequence alignment