Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   FORC16_RS00670 Genome accession   NZ_CP011775
Coordinates   140662..142743 (-) Length   693 a.a.
NCBI ID   WP_060532750.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_016     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 135662..147743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC16_RS00650 (FORC16_0114) greB 136130..136612 (+) 483 WP_013572566.1 transcription elongation factor GreB -
  FORC16_RS00655 (FORC16_0115) ompR 136813..137532 (+) 720 WP_011078925.1 two-component system response regulator OmpR -
  FORC16_RS00660 (FORC16_0116) envZ 137625..138923 (+) 1299 WP_011078924.1 two-component system sensor histidine kinase EnvZ -
  FORC16_RS00665 (FORC16_0117) - 139000..140406 (-) 1407 WP_047110342.1 uracil-xanthine permease family protein -
  FORC16_RS00670 (FORC16_0118) recG 140662..142743 (-) 2082 WP_060532750.1 ATP-dependent DNA helicase RecG Machinery gene
  FORC16_RS00675 (FORC16_0119) trmH 142967..143653 (-) 687 WP_060532748.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  FORC16_RS00680 (FORC16_0120) spoT 143741..145861 (-) 2121 WP_011078920.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  FORC16_RS00685 (FORC16_0121) rpoZ 145896..146168 (-) 273 WP_011078919.1 DNA-directed RNA polymerase subunit omega -
  FORC16_RS00690 (FORC16_0122) gmk 146296..146919 (-) 624 WP_011078918.1 guanylate kinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76838.04 Da        Isoelectric Point: 7.5952

>NTDB_id=129305 FORC16_RS00670 WP_060532750.1 140662..142743(-) (recG) [Vibrio vulnificus strain FORC_016]
MSAQLLSAVPLTSLIGVGAKVAEKLEKIGLISVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGHVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEINLELFDEGKHPAQVRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDLQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVDRIRHACL
NEGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=129305 FORC16_RS00670 WP_060532750.1 140662..142743(-) (recG) [Vibrio vulnificus strain FORC_016]
ATGTCTGCCCAACTGTTATCTGCTGTCCCCCTCACATCCCTCATTGGGGTCGGTGCTAAGGTGGCTGAAAAGCTGGAGAA
AATTGGCCTAATCAGCGTGCAAGATCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGCACCCGCATCTACCCGATTG
CCAAATTGCATGCAGGACTATGGGCTGCTGTACAGGGACATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTGACGGTAAAACTCAGCGACGGGAATGGCACCATCACGTTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCCGAAGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGTAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAACAGAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCCGCGGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATTAATCTGGAACTGTTCG
ACGAAGGGAAGCACCCTGCCCAAGTTCGCTTAATTATGGAAGAGTTGCTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGCTGCCACTTCCCCCCGTCCACCAGCTTAAACAGCAGCTGTTAGCCCAACTGCCTTT
TTCACCAACCAATGCCCAAGCGCGAGTGGTGCAAGAGATTGAAGAAGATTTGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGTTCTGGCAAAACCTTAGTGGCAGCCTTGGCCGCGGTACGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAACTTCTGGCCGAGCAGCACGCGATCAACTTCGCCAATTGGTTTGAAAAAATGGGCATTCC
CGTTGGCTGGCTCGCAGGCAAGCTCAAAGGCAAAGCCAAAGAAGCCGAGTTAGCCCGCATTGCCAGTGGCGAAGCCAAAA
TGGTGGTCGGAACACATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCCCTTGTGATCATTGATGAACAGCAC
CGCTTTGGCGTGCATCAACGCTTGGAACTGCGCGAAAAAGGCGCCAAACAAGGCGCTTACCCACATCAACTGATCATGAC
TGCTACTCCGATCCCTCGCACATTGGCCATGACCGCCTATGCCGATTTGGAAACATCGGTGATCGACGAATTACCGCCGG
GACGAACCCCTATCCAAACCGTCGCGATTCCCGACACCAAACGCGAGGACATTGTCGATCGCATTCGTCATGCCTGCCTC
AATGAGGGTAAGCAGGCGTATTGGGTCTGTACCCTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCAGAAAC
TGCCGAAGAGCTGCAACGTAAATTACCTGATGTGCGCATTGGTTTGGTGCACGGCCGAATGAAACCAGCTGAAAAACAAG
CGGTAATGCAAGCTTTCAAAAACAATGAATTGCATCTTTTGGTGGCCACCACAGTGATCGAAGTCGGTGTCGATGTGCCC
AACGCCAGCTTGATGATCATCGAAAACCCCGAGCGCTTGGGTCTAGCACAATTGCACCAGTTGCGCGGTCGCGTGGGTCG
AGGCTCAGTAGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACGGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCTCAGCGCGATCTTGAGATCCGTGGGCCAGGTGAGCTGCTCGGCACCAAACAA
ACTGGCCTGGCGGATTTCAAAATTGCCGATCTCGTCCGCGACCAGCGCCTTATCCCCGAAGTTCAACGCGCCGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGTTGGGCGAGCGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-433)

RecG wedge domain (RecG_wedge)

(16-172)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.256

96.97

0.478
  recG/mmsA Streptococcus pneumoniae R6

40.089

96.825

0.388
  recG/mmsA Streptococcus pneumoniae R36A

40.089

96.825

0.388
  recG Bacillus subtilis subsp. subtilis str. 168

38.714

96.537

0.374

Multiple sequence alignment