Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   M444_RS18950 Genome accession   NZ_CP011664
Coordinates   4398322..4398993 (-) Length   223 a.a.
NCBI ID   WP_037797933.1    Uniprot ID   A0ABZ1RLS1
Organism   Streptomyces sp. Mg1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4393322..4403993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS18930 (M444_18910) - 4393346..4394938 (+) 1593 WP_037797927.1 ABC transporter permease -
  M444_RS18935 (M444_18915) - 4394971..4396173 (-) 1203 WP_037797928.1 cytochrome P450 -
  M444_RS18940 (M444_18920) vraR 4396237..4396896 (-) 660 WP_037797930.1 response regulator transcription factor Regulator
  M444_RS18945 (M444_18925) - 4396893..4398185 (-) 1293 WP_078899720.1 histidine kinase -
  M444_RS18950 (M444_18930) vraR 4398322..4398993 (-) 672 WP_037797933.1 response regulator transcription factor Regulator
  M444_RS18955 (M444_18935) - 4398990..4400321 (-) 1332 WP_235441269.1 sensor histidine kinase -
  M444_RS18960 (M444_18940) - 4400344..4401558 (-) 1215 WP_037797935.1 acyltransferase -
  M444_RS18965 (M444_18945) - 4401551..4402504 (-) 954 WP_037797937.1 alpha/beta hydrolase -
  M444_RS18970 (M444_18950) - 4402685..4403185 (+) 501 WP_107082560.1 diadenosine tetraphosphate hydrolase -
  M444_RS18975 (M444_18955) - 4403193..4403591 (-) 399 WP_037797942.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23641.41 Da        Isoelectric Point: 4.7958

>NTDB_id=129169 M444_RS18950 WP_037797933.1 4398322..4398993(-) (vraR) [Streptomyces sp. Mg1]
MSTPIKVMIADDQMMVRQGFTVLLNAQPDIEVVGQAVDGADAVAKVAELAPDVVLMDIRMPGMGGIEATAVITGDPAGAV
KVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRMGAPRGPSKAKLGELTE
RETEVLSLIAQGLSNAEIARHLIVAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGLVRPTGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=129169 M444_RS18950 WP_037797933.1 4398322..4398993(-) (vraR) [Streptomyces sp. Mg1]
ATGAGCACCCCGATCAAGGTGATGATCGCCGACGACCAGATGATGGTCCGGCAGGGCTTCACCGTGCTCCTCAACGCCCA
GCCCGACATCGAGGTGGTCGGTCAGGCCGTGGACGGGGCCGACGCGGTGGCGAAGGTCGCCGAGCTCGCCCCGGATGTGG
TCCTGATGGACATCCGCATGCCCGGCATGGGCGGCATCGAGGCGACCGCCGTCATCACCGGCGACCCGGCCGGCGCCGTG
AAGGTGCTGGTGCTGACCACCTTCGATCTCGACGAGTACGTCTACGAGGCGCTGCGCGCCGGGGCCTCCGGGTTCCTGCT
CAAGGACGCGTCGGCCGACCAGCTCGCGGAGGCGGTGCGGGTGGTGGCGGCCGGCGAGGCGCTGCTGTCGCCGAACATCA
CCAAGCGGCTCATCACCGAGTTCTCCCGGATGGGGGCGCCTCGGGGGCCGTCGAAGGCGAAGCTCGGGGAGCTGACCGAG
CGGGAGACGGAGGTGCTGTCGCTGATCGCCCAGGGCCTGTCCAACGCGGAGATCGCGCGGCATCTGATCGTGGCCGAGCA
GACGGTGAAGACGCATGTGGGGCGGATCCTGGTGAAGCTGGGTCTGCGGGACCGCACCCAGGCGGCGGTGTTCGCGTACG
AGACGGGTCTGGTCCGTCCGACGGGGTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(7-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.833

96.861

0.444
  degU Bacillus subtilis subsp. subtilis str. 168

41.15

100

0.417