Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   M444_RS18940 Genome accession   NZ_CP011664
Coordinates   4396237..4396896 (-) Length   219 a.a.
NCBI ID   WP_037797930.1    Uniprot ID   A0ABZ1RKW1
Organism   Streptomyces sp. Mg1     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4391237..4401896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M444_RS18920 (M444_18900) - 4391898..4392377 (-) 480 WP_047961074.1 MarR family transcriptional regulator -
  M444_RS18925 (M444_18905) - 4392453..4393349 (+) 897 WP_008741380.1 ABC transporter ATP-binding protein -
  M444_RS18930 (M444_18910) - 4393346..4394938 (+) 1593 WP_037797927.1 ABC transporter permease -
  M444_RS18935 (M444_18915) - 4394971..4396173 (-) 1203 WP_037797928.1 cytochrome P450 -
  M444_RS18940 (M444_18920) vraR 4396237..4396896 (-) 660 WP_037797930.1 response regulator transcription factor Regulator
  M444_RS18945 (M444_18925) - 4396893..4398185 (-) 1293 WP_078899720.1 histidine kinase -
  M444_RS18950 (M444_18930) vraR 4398322..4398993 (-) 672 WP_037797933.1 response regulator transcription factor Regulator
  M444_RS18955 (M444_18935) - 4398990..4400321 (-) 1332 WP_235441269.1 sensor histidine kinase -
  M444_RS18960 (M444_18940) - 4400344..4401558 (-) 1215 WP_037797935.1 acyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23622.29 Da        Isoelectric Point: 4.3896

>NTDB_id=129168 M444_RS18940 WP_037797930.1 4396237..4396896(-) (vraR) [Streptomyces sp. Mg1]
MTIRVLIVDDQMMVREGFSVLLNAMDGIEVVGEAVDGRQAIAQVAALEPDVVLMDIRMPEMNGLEATREIVAADTDAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLAEGVRVVASGEALLAPSVTKRLISEFSKLSEAPKLADPASVGELTERE
TEVLVLIAQGLSNAEIADRLIVAESTIKTHVSRILVKLGLRDRTQAAVFAYETRLVTPT

Nucleotide


Download         Length: 660 bp        

>NTDB_id=129168 M444_RS18940 WP_037797930.1 4396237..4396896(-) (vraR) [Streptomyces sp. Mg1]
ATGACGATCAGGGTGCTGATCGTGGACGACCAGATGATGGTCCGCGAAGGCTTCTCGGTGCTGCTGAACGCGATGGACGG
CATCGAGGTGGTGGGCGAGGCGGTCGACGGCCGCCAGGCCATCGCCCAGGTCGCGGCGCTGGAGCCGGATGTGGTGCTGA
TGGACATCCGGATGCCGGAGATGAACGGGCTGGAGGCGACGCGGGAGATCGTGGCCGCCGACACGGACGCGAAGGTGCTG
GTCCTGACGACCTTCGACCTCGACGAGTACGTGTACCAGGCCCTGCGGGCCGGGGCCTCCGGGTTCCTGCTGAAGGACGC
CTCGGCCCGGCAGCTGGCCGAGGGGGTGCGGGTAGTGGCTTCCGGGGAGGCGCTGCTGGCGCCCTCGGTGACCAAGCGGC
TGATCTCCGAGTTCTCGAAGCTGTCGGAGGCGCCGAAGCTGGCGGATCCGGCGAGTGTGGGGGAGTTGACCGAGCGGGAG
ACGGAGGTGCTGGTGCTGATCGCGCAGGGGCTGTCCAACGCGGAGATAGCGGACCGGCTCATCGTCGCGGAGTCCACGAT
CAAGACGCATGTGAGCCGGATCCTGGTGAAGCTGGGCCTGCGCGACCGCACCCAGGCGGCGGTATTCGCCTACGAGACCC
GGCTGGTGACGCCGACGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(156-210)

Response regulator receiver domain (Response_reg)

(5-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.444

98.63

0.438
  degU Bacillus subtilis subsp. subtilis str. 168

40.889

100

0.42

Multiple sequence alignment