Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ABO05_RS08830 Genome accession   NZ_CP011535
Coordinates   1802803..1803399 (-) Length   198 a.a.
NCBI ID   WP_011285268.1    Uniprot ID   Q48QW4
Organism   Streptococcus pyogenes strain M28PF1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1797803..1808399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABO05_RS08795 (ABO05_08815) - 1797863..1798168 (-) 306 WP_002982199.1 DUF1292 domain-containing protein -
  ABO05_RS08800 (ABO05_08820) ruvX 1798180..1798599 (-) 420 WP_002982196.1 Holliday junction resolvase RuvX -
  ABO05_RS08805 (ABO05_08825) - 1798596..1798865 (-) 270 WP_002982194.1 IreB family regulatory phosphoprotein -
  ABO05_RS08810 (ABO05_08830) spx 1798979..1799377 (-) 399 WP_002982188.1 transcriptional regulator Spx -
  ABO05_RS08815 (ABO05_08835) recA 1799668..1800804 (-) 1137 WP_011285265.1 recombinase RecA -
  ABO05_RS08820 (ABO05_08840) cinA 1800893..1802164 (-) 1272 WP_011285266.1 competence/damage-inducible protein A Machinery gene
  ABO05_RS08825 (ABO05_08845) - 1802233..1802793 (-) 561 WP_011018314.1 DNA-3-methyladenine glycosylase I -
  ABO05_RS08830 (ABO05_08850) ruvA 1802803..1803399 (-) 597 WP_011285268.1 Holliday junction branch migration protein RuvA Machinery gene
  ABO05_RS08835 (ABO05_08855) - 1803401..1804621 (-) 1221 WP_011285269.1 MFS transporter -
  ABO05_RS08840 (ABO05_08860) hexB 1804632..1806614 (-) 1983 WP_021340699.1 DNA mismatch repair endonuclease MutL Machinery gene
  ABO05_RS08845 (ABO05_08865) - 1806709..1807860 (-) 1152 WP_003058754.1 site-specific integrase -
  ABO05_RS10320 - 1808109..1808252 (+) 144 WP_011185066.1 putative holin-like toxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21811.12 Da        Isoelectric Point: 6.2537

>NTDB_id=129124 ABO05_RS08830 WP_011285268.1 1802803..1803399(-) (ruvA) [Streptococcus pyogenes strain M28PF1]
MYDYIKGQLTKITAKYIVVETNGLGYIINVANPYSFTDSVNQLVTIYLHQVIREDAHLLFGFHTEDEKDVFLKLISVSGI
GPTTALAIVAVDDNEGLVNAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFVEAPQETGNTKARSNKAGNTQLDEAIEAL
LALGYKAAELKKIRAFFEGTSETAEQYIKSALKLLMKG

Nucleotide


Download         Length: 597 bp        

>NTDB_id=129124 ABO05_RS08830 WP_011285268.1 1802803..1803399(-) (ruvA) [Streptococcus pyogenes strain M28PF1]
ATGTACGATTATATTAAAGGTCAATTGACCAAAATTACGGCAAAATACATTGTCGTTGAAACAAATGGACTAGGCTATAT
TATCAATGTAGCCAATCCTTATAGCTTTACAGATAGTGTCAACCAACTGGTAACTATTTACCTGCATCAAGTGATTCGTG
AGGATGCTCACTTGTTGTTTGGGTTTCATACGGAAGACGAAAAAGATGTTTTTCTGAAATTAATTTCTGTATCTGGCATT
GGCCCCACAACAGCTCTTGCTATTGTGGCAGTTGATGATAATGAGGGACTTGTGAATGCCATTGATAACAGTGACATTAA
GTACCTAATGAAATTTCCTAAAATTGGTAAAAAAACAGCGCAGCAAATGGTTCTTGACTTAGCTGGCAAATTTGTGGAGG
CTCCACAAGAGACTGGTAATACCAAAGCGCGCAGCAATAAAGCAGGCAATACTCAACTGGACGAAGCGATTGAAGCCCTC
CTTGCCCTCGGTTATAAGGCAGCGGAATTGAAGAAAATTCGTGCCTTCTTTGAAGGAACCTCTGAAACGGCCGAACAATA
CATCAAATCAGCCCTTAAACTATTAATGAAAGGCTAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(152-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q48QW4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae R6

67.005

99.495

0.667
  ruvA Streptococcus pneumoniae D39

67.005

99.495

0.667
  ruvA Bacillus subtilis subsp. subtilis str. 168

41.379

100

0.424

Multiple sequence alignment