Detailed information NTG0129072

Bioinformatically predicted

Overview

• Name: comP
• Type: Machinery gene
• Locus tag: LA58_RS00015
• Genome accession: NZ_CP009420
• Coordinates: 1404..1853 (+)
• Length: 149 a.a.
• NCBI ID: WP_002221685.1
• Uniprot ID: A1KW94
• Organism: Neisseria meningitidis strain NM3682
• Function: DNA binding; DNA uptake; receptor of DNA uptake sequence (DUS) (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IScluster/Tn	2550..3891	1404..1853	flank	697

Gene organization within MGE regions

Location: 1404..3891

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LA58_RS00015 (LA58_00020)	comP	1404..1853 (+)	450	WP_002221685.1	type IV pilin protein	Machinery gene
LA58_RS00020 (LA58_00025)	-	1943..2337 (-)	395	Protein_2	5'-nucleotidase	-
LA58_RS11440	-	2550..2900 (+)	351	Protein_3	IS5/IS1182 family transposase	-
LA58_RS00025 (LA58_00035)	-	2926..3891 (-)	966	WP_002216744.1	IS30-like element IS1655 family transposase	-

Sequence

Protein

• Length: 149 a.a.
• Molecular weight: 16848.83 Da
• Isoelectric Point: 9.7951

>NTDB_id=129072 LA58_RS00015 WP_002221685.1 1404..1853(+) (comP) [Neisseria meningitidis strain NM3682]
MTDNRGFTLVELISVVLILSVLALIVYPSYRNYIEKAKINAVRAALLENAHFMEKFYLQNGRFKQTSTKWPSLPIKEAEG
FCIRLNGIARGALDSKFMLKAVAIDKDKNPFIIKMNENLVTFICKKSASSCSDGLDYFKGNDKDCKLLK

Nucleotide

• Length: 450 bp

>NTDB_id=129072 LA58_RS00015 WP_002221685.1 1404..1853(+) (comP) [Neisseria meningitidis strain NM3682]
ATGACTGATAATCGGGGGTTTACGCTGGTTGAATTAATATCAGTGGTCTTGATATTGTCTGTACTTGCTTTAATTGTTTA
TCCGAGCTATCGCAATTATATTGAGAAAGCAAAGATAAATGCAGTGCGGGCAGCCTTGTTAGAAAATGCACATTTTATGG
AAAAGTTTTATCTGCAGAATGGGAGATTTAAACAAACATCTACCAAATGGCCAAGTTTGCCGATTAAAGAGGCAGAAGGC
TTTTGTATCCGTTTGAATGGAATCGCGCGCGGGGCCTTAGACAGTAAATTCATGTTGAAGGCGGTAGCCATAGATAAAGA
TAAAAATCCTTTTATTATTAAGATGAATGAAAATCTAGTAACCTTTATTTGCAAGAAGTCCGCCAGTTCGTGTAGTGACG
GGCTGGATTATTTTAAAGGAAATGATAAGGACTGCAAGTTACTTAAGTAG

Domains

Predicted by InterproScan.

• Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS) (28-107)

• Prokaryotic N-terminal methylation motif (N_methyl) (1-27)

3D structure

• AlphaFold DB: A1KW94

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comP	Neisseria gonorrhoeae MS11	99.329	100	0.993
comP	Neisseria meningitidis 8013	98.658	100	0.987
comP	Neisseria subflava NJ9703	48.98	98.658	0.483