Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   PDUR_RS26685 Genome accession   NZ_CP009288
Coordinates   6018224..6018718 (-) Length   164 a.a.
NCBI ID   WP_025701889.1    Uniprot ID   -
Organism   Paenibacillus durus strain DSM 1735     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6013224..6023718
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDUR_RS26670 (PDUR_27735) opp4A 6013514..6015250 (-) 1737 WP_052410427.1 oligopeptide ABC transporter substrate-binding protein -
  PDUR_RS26675 (PDUR_27740) - 6015424..6017373 (-) 1950 WP_042208905.1 endonuclease MutS2 -
  PDUR_RS26680 (PDUR_27745) rpsR 6017930..6018202 (-) 273 WP_025692516.1 30S ribosomal protein S18 -
  PDUR_RS26685 (PDUR_27750) ssbA 6018224..6018718 (-) 495 WP_025701889.1 single-stranded DNA-binding protein Machinery gene
  PDUR_RS26690 (PDUR_27755) rpsF 6018769..6019053 (-) 285 WP_042208906.1 30S ribosomal protein S6 -
  PDUR_RS26695 (PDUR_27760) - 6019275..6019472 (+) 198 WP_025337148.1 YjzC family protein -
  PDUR_RS26705 (PDUR_27770) - 6020018..6020698 (-) 681 WP_052410428.1 ABC transporter permease -
  PDUR_RS26710 (PDUR_27775) - 6020691..6021611 (-) 921 WP_042208907.1 ABC transporter ATP-binding protein -
  PDUR_RS26715 (PDUR_27780) - 6021753..6022688 (-) 936 WP_042208908.1 sensor histidine kinase KdpD -
  PDUR_RS26720 (PDUR_27785) - 6022685..6023404 (-) 720 WP_042208909.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17882.73 Da        Isoelectric Point: 5.0001

>NTDB_id=128293 PDUR_RS26685 WP_025701889.1 6018224..6018718(-) (ssbA) [Paenibacillus durus strain DSM 1735]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQSREGGNASGGGNMPEPPSYGGGGRGNSGNGGFSRNNNQDPFSGDGKPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=128293 PDUR_RS26685 WP_025701889.1 6018224..6018718(-) (ssbA) [Paenibacillus durus strain DSM 1735]
ATGTTGAACCGTGTCATACTGATCGGCCGATTGACCCGCGATCCTGAGTTGCGCTATACGCCTGCCGGCGTTGCCGTAAC
CCAGTTTACGCTTGCCGTAGACCGGCCTTTTACAAGCCAAGGCGGCGAACGTGAAGCGGATTTCATTCCGGTCGTTACCT
GGAGACAGCTGGCGGAGACCTGTGCCAATTACTTGCGCAAAGGTCGGCTGACGGCGGTAGAGGGACGCATCCAAGTACGG
AATTACGAGAATAACGAAGGCAAACGTGTATACGTAACCGAGGTTATTGCCGATAATGTCCGGTTCCTGGAATCTTCCCA
GAGCCGAGAGGGCGGAAACGCATCCGGCGGGGGAAATATGCCCGAGCCACCTTCATACGGCGGCGGCGGACGCGGAAACA
GCGGAAATGGCGGTTTCTCGCGCAACAATAATCAGGATCCCTTTTCGGGCGACGGTAAGCCGATTGACATATCGGATGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.579
  ssb Latilactobacillus sakei subsp. sakei 23K

51.163

100

0.537
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

63.415

0.366

Multiple sequence alignment