Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   SpyM6JRS4_RS07115 Genome accession   NZ_CP011414
Coordinates   1412100..1414115 (-) Length   671 a.a.
NCBI ID   WP_011184887.1    Uniprot ID   -
Organism   Streptococcus pyogenes JRS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1407100..1419115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SpyM6JRS4_RS07095 (SpyM6JRS4_07090) - 1407415..1408803 (-) 1389 WP_010922607.1 Cof-type HAD-IIB family hydrolase -
  SpyM6JRS4_RS07100 (SpyM6JRS4_07095) - 1408875..1409840 (+) 966 WP_011184885.1 asparaginase -
  SpyM6JRS4_RS07105 (SpyM6JRS4_07100) - 1410189..1410893 (-) 705 WP_002988556.1 ABC transporter permease -
  SpyM6JRS4_RS07110 (SpyM6JRS4_07105) - 1410906..1411808 (-) 903 WP_002991995.1 ABC transporter ATP-binding protein -
  SpyM6JRS4_RS07115 (SpyM6JRS4_07110) recG/mmsA 1412100..1414115 (-) 2016 WP_011184887.1 ATP-dependent DNA helicase RecG Machinery gene
  SpyM6JRS4_RS07120 (SpyM6JRS4_07115) - 1414490..1415944 (-) 1455 WP_011184889.1 ABC transporter ATP-binding protein -
  SpyM6JRS4_RS07125 (SpyM6JRS4_07120) - 1415881..1416561 (-) 681 WP_002983239.1 energy-coupling factor transporter transmembrane component T -
  SpyM6JRS4_RS07130 (SpyM6JRS4_07125) - 1416558..1417151 (-) 594 WP_002983234.1 MptD family putative ECF transporter S component -
  SpyM6JRS4_RS07135 (SpyM6JRS4_07130) - 1417148..1418818 (-) 1671 WP_021340306.1 amino acid ABC transporter ATP-binding/permease protein -

Sequence

Protein


Download         Length: 671 a.a.        Molecular weight: 75208.98 Da        Isoelectric Point: 7.4046

>NTDB_id=127953 SpyM6JRS4_RS07115 WP_011184887.1 1412100..1414115(-) (recG/mmsA) [Streptococcus pyogenes JRS4]
MILTAPMSNLKGFGPKSAEKFQKLDIYTVEDLLLYYPFRYEDFKSKSVFDLVDGEKAVITGLVVTPANVQYYGFKRNRLS
FKLRQGEAVLNVSFFNQPYLADKIELGQEVAVFGKWDATKSAITGMKVLAQVEDDMQPVYRVAQGISQSTLIKAIKSAFE
IDAHLELKENLPATLLEKYRLMGRSQACLAMHFPKDITEYKQALRRIKFEELFYFQMNLQVLKAENRSETNGLPILYSKH
AMETKISSLPFILTNAQKRSLDDILSDMSSGAHMNRLLQGDVGSGKTVIASLSMYAAYTAGFQSALMVPTEILAEQHYIS
LQELFPDLSIAILTSGMKAAVKRTVLAAIANGSVDMIVGTHALIQDSVQYHKLGLVITDEQHRFGVKQRRIFREKGENPD
VLMMTATPIPRTLAITAFGEMDVSVIDELPAGRKPIMTRWVKHEQLGTVLEWVKGELQKDAQVYVISPLIEESEALDLKN
AVALHAELSTYFEGIAKVALVHGRMKNDEKDAIMQDFKDKKSHILVSTTVIEVGVNVPNATIMIIMDADRFGLSQLHQLR
GRVGRGHKQSYAVLVANPKTDSGKKRMTIMTETTDGFVLAESDLKMRGSGEIFGTRQSGIPEFQVADIVEDYPILEEARK
VSAAIVSDPNWIYEKQWQLVAKNIRKKEVYD

Nucleotide


Download         Length: 2016 bp        

>NTDB_id=127953 SpyM6JRS4_RS07115 WP_011184887.1 1412100..1414115(-) (recG/mmsA) [Streptococcus pyogenes JRS4]
ATGATATTAACAGCTCCTATGTCCAACTTAAAGGGATTTGGACCAAAATCAGCAGAAAAATTTCAGAAATTAGATATTTA
TACAGTAGAAGATTTACTGCTTTATTATCCGTTTCGCTATGAAGATTTTAAATCAAAATCTGTTTTTGATTTAGTGGATG
GTGAAAAAGCAGTCATTACAGGCTTAGTCGTTACTCCAGCTAATGTACAATATTATGGTTTTAAACGTAACCGTTTAAGT
TTCAAATTGCGTCAAGGGGAAGCTGTCTTAAATGTTAGTTTTTTTAATCAACCCTATTTAGCTGATAAAATAGAACTTGG
TCAAGAGGTAGCTGTTTTTGGTAAATGGGATGCCACTAAATCGGCTATTACTGGGATGAAGGTTTTAGCTCAAGTTGAAG
ATGACATGCAACCTGTTTATCGCGTAGCTCAGGGAATTTCACAGTCTACTTTGATTAAAGCTATTAAGTCAGCTTTTGAA
ATCGATGCGCATTTGGAATTGAAGGAAAATTTACCAGCTACTTTATTGGAAAAATACCGATTGATGGGTCGTAGTCAGGC
TTGTTTAGCTATGCATTTCCCAAAAGATATCACAGAGTATAAGCAAGCGCTCCGTCGGATTAAATTTGAAGAATTATTTT
ACTTTCAAATGAACCTTCAAGTTTTGAAAGCCGAAAATAGATCTGAAACAAATGGTTTGCCTATTCTTTATAGTAAACAT
GCTATGGAGACAAAGATTTCCTCTTTACCCTTTATTCTAACAAATGCTCAAAAGCGCTCTTTAGATGACATATTATCTGA
TATGTCATCGGGAGCTCATATGAATCGTTTATTGCAAGGAGATGTAGGATCAGGAAAGACAGTCATTGCTAGTCTATCAA
TGTATGCAGCTTATACAGCAGGTTTTCAATCGGCTTTGATGGTTCCAACGGAAATCCTAGCTGAACAACACTATATTAGT
CTGCAAGAGTTATTTCCAGATTTATCAATTGCTATATTAACTTCGGGTATGAAAGCCGCTGTCAAGCGTACGGTTTTAGC
AGCTATTGCAAATGGCTCGGTTGATATGATTGTAGGAACTCATGCTCTTATCCAAGACTCGGTACAGTACCATAAACTGG
GGCTTGTCATTACAGACGAGCAACATCGTTTTGGTGTTAAACAGCGTAGAATTTTCCGTGAAAAGGGAGAAAATCCTGAT
GTTTTAATGATGACAGCCACCCCAATTCCCCGAACTCTAGCAATCACAGCTTTTGGAGAAATGGATGTTTCTGTTATTGA
TGAATTACCTGCCGGTCGTAAACCTATTATGACACGCTGGGTGAAACACGAGCAGCTAGGGACTGTGTTGGAATGGGTAA
AAGGTGAATTGCAAAAAGATGCTCAAGTGTATGTCATTTCACCGTTGATTGAAGAATCAGAAGCTTTAGATTTAAAGAAT
GCAGTAGCATTGCATGCTGAATTATCTACTTATTTTGAAGGAATTGCTAAGGTTGCTCTTGTACATGGACGTATGAAAAA
TGATGAAAAAGATGCCATAATGCAAGATTTCAAGGATAAAAAAAGTCATATTTTAGTATCCACAACAGTTATTGAAGTAG
GGGTAAATGTCCCAAATGCAACGATCATGATTATTATGGATGCCGATCGTTTTGGATTAAGCCAGTTACATCAACTTCGT
GGGCGTGTTGGTCGTGGACATAAACAATCATACGCTGTTTTAGTGGCTAATCCCAAAACGGATTCGGGGAAAAAACGAAT
GACAATCATGACAGAAACGACAGATGGTTTCGTTTTGGCTGAGTCGGATTTAAAAATGCGTGGTTCTGGTGAAATCTTTG
GTACTCGTCAGTCTGGAATTCCAGAGTTTCAAGTAGCTGATATCGTTGAGGATTATCCTATTTTAGAAGAAGCACGCAAA
GTTTCTGCAGCGATTGTTTCTGATCCTAACTGGATATATGAAAAACAGTGGCAATTAGTAGCAAAAAATATTAGAAAAAA
AGAAGTTTATGATTAA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(458-566)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(593-665)

DEAD/DEAH box helicase (DEAD)

(254-411)

RecG wedge domain (RecG_wedge)

(10-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.535

100

0.715
  recG/mmsA Streptococcus pneumoniae R36A

71.535

100

0.715
  recG Bacillus subtilis subsp. subtilis str. 168

49.254

99.851

0.492
  recG Neisseria meningitidis strain C311

38.405

100

0.387