Detailed information NTG0127847

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: JV59_RS01440
• Genome accession: NZ_CP009264
• Coordinates: 269883..270752 (-)
• Length: 289 a.a.
• NCBI ID: WP_006958139.1
• Uniprot ID: A0A837G3P6
• Organism: Vibrio coralliilyticus strain OCN014
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 264883..275752

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JV59_RS01405 (JV59_26565)	rpsP	265999..266247 (+)	249	WP_005438039.1	30S ribosomal protein S16	-
JV59_RS01410 (JV59_01390)	rimM	266277..266825 (+)	549	WP_029236289.1	ribosome maturation factor RimM	-
JV59_RS01415 (JV59_01395)	trmD	266853..267596 (+)	744	WP_038509642.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
JV59_RS01420 (JV59_26570)	rplS	267638..267991 (+)	354	WP_006958143.1	50S ribosomal protein L19	-
JV59_RS01425 (JV59_26575)	yacG	268253..268447 (-)	195	WP_019277521.1	DNA gyrase inhibitor YacG	-
JV59_RS01430 (JV59_01410)	zapD	268499..269239 (-)	741	WP_038509645.1	cell division protein ZapD	-
JV59_RS01435 (JV59_01415)	coaE	269273..269881 (-)	609	WP_038509649.1	dephospho-CoA kinase	-
JV59_RS01440 (JV59_01420)	pilD	269883..270752 (-)	870	WP_006958139.1	prepilin peptidase	Machinery gene
JV59_RS01445 (JV59_01425)	-	270802..272037 (-)	1236	WP_038509652.1	type II secretion system F family protein	-
JV59_RS01450 (JV59_01430)	pilB	272046..273692 (-)	1647	WP_038509654.1	type IV-A pilus assembly ATPase PilB	Machinery gene
JV59_RS01455 (JV59_26580)	-	273695..274135 (-)	441	WP_031343346.1	pilin	-
JV59_RS01460 (JV59_01440)	nadC	274363..275250 (-)	888	WP_019277527.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32477.41 Da
• Isoelectric Point: 6.6830

>NTDB_id=127847 JV59_RS01440 WP_006958139.1 269883..270752(-) (pilD) [Vibrio coralliilyticus strain OCN014]
MDLFNYYPWLFPTLATIFGLIIGSFLNVVIHRLPQMMEREWRHECAESFPEYGIAPPHGTYNLSIPRSTCPSCKTQIRNL
DNIPVISWLLLRGKCRACQAKISPRYPLVELLSGAMSFAIAYQFELSAFAIALLFFTFVLIAATFIDFDTMLLPDQLTFP
LIWSGIALALLDFSPVSLQDSVIGAMAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQYLPVIVLLSSLVGL
VFGIIQLRLQKQGIDKAFPFGPYLAIAGWVSAMWGENIINWYFTQILGI

Nucleotide

• Length: 870 bp

>NTDB_id=127847 JV59_RS01440 WP_006958139.1 269883..270752(-) (pilD) [Vibrio coralliilyticus strain OCN014]
ATGGATCTGTTTAACTATTACCCGTGGTTGTTTCCCACACTTGCCACTATTTTTGGCCTGATCATTGGCAGTTTTCTCAA
CGTAGTAATCCACCGTTTACCACAAATGATGGAGCGAGAGTGGCGACACGAGTGTGCTGAAAGCTTCCCAGAATACGGTA
TCGCTCCTCCACACGGTACCTATAACCTCAGTATTCCTCGCTCCACCTGCCCAAGCTGTAAAACGCAAATCCGTAATCTC
GACAATATCCCGGTTATTAGCTGGCTACTTTTGCGTGGTAAATGTCGTGCCTGTCAGGCCAAAATTAGCCCTCGCTATCC
GTTGGTTGAGTTGCTGTCAGGTGCAATGAGCTTTGCTATTGCTTATCAGTTTGAACTGAGCGCTTTTGCCATCGCCCTGC
TATTTTTTACCTTCGTCCTGATTGCGGCAACATTCATTGATTTTGATACCATGCTGCTGCCAGACCAGCTTACCTTTCCG
CTAATTTGGTCAGGTATTGCTCTTGCCTTATTAGACTTCAGCCCGGTTTCCCTGCAAGATTCTGTTATTGGGGCTATGGC
GGGTTATTTATGTTTATGGTCTGTCTACTGGGGCTTCAAGTTACTCACTGGTAAAGAAGGCATGGGCTATGGAGATTTCA
AACTTCTTGCCGCACTAGGCGCTTGGTTAGGTTGGCAGTACTTGCCTGTTATCGTGTTACTTTCCTCATTAGTAGGCCTA
GTCTTTGGCATTATTCAACTGCGACTACAAAAGCAAGGTATAGATAAAGCTTTTCCATTCGGCCCTTATCTCGCTATTGC
GGGATGGGTCAGTGCCATGTGGGGAGAGAACATCATAAATTGGTACTTCACACAAATCTTGGGGATCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

3D structure

• AlphaFold DB: A0A837G3P6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	76.125	100	0.761
pilD	Vibrio cholerae strain A1552	73.958	99.654	0.737
pilD	Acinetobacter baumannii D1279779	51.661	93.772	0.484
pilD	Acinetobacter nosocomialis M2	51.661	93.772	0.484
pilD	Neisseria gonorrhoeae MS11	47.735	99.308	0.474