Detailed information NTG0127769

Bioinformatically predicted

Overview

• Name: ssbA
• Type: Machinery gene
• Locus tag: IJ09_RS13140
• Genome accession: NZ_CP009258
• Coordinates: 2605258..2605737 (+)
• Length: 159 a.a.
• NCBI ID: WP_012951949.1
• Uniprot ID: -
• Organism: Listeria monocytogenes strain Lm60
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 2600258..2610737

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IJ09_RS13090 (IJ09_13315)	-	2600479..2600667 (+)	189	WP_003722564.1	gp45 family putative tail fiber system protein	-
IJ09_RS15730	-	2600749..2600877 (+)	129	WP_003743356.1	hypothetical protein	-
IJ09_RS13095 (IJ09_13330)	-	2600973..2601167 (+)	195	WP_003734953.1	hypothetical protein	-
IJ09_RS13100 (IJ09_13335)	-	2601164..2601640 (+)	477	WP_012951957.1	siphovirus Gp157 family protein	-
IJ09_RS13105 (IJ09_13340)	-	2601646..2602305 (+)	660	WP_012951956.1	ERF family protein	-
IJ09_RS13110 (IJ09_13345)	-	2602322..2603305 (+)	984	WP_012951955.1	phage replisome organizer N-terminal domain-containing protein	-
IJ09_RS13115 (IJ09_13350)	-	2603302..2603589 (+)	288	WP_012951954.1	hypothetical protein	-
IJ09_RS13120 (IJ09_13355)	-	2603586..2604116 (+)	531	WP_012951953.1	hypothetical protein	-
IJ09_RS13125 (IJ09_13360)	-	2604252..2604482 (+)	231	WP_031645470.1	DUF3850 domain-containing protein	-
IJ09_RS13130 (IJ09_13365)	-	2604504..2604863 (+)	360	WP_012951951.1	hypothetical protein	-
IJ09_RS13135 (IJ09_13370)	-	2604860..2605261 (+)	402	WP_012951950.1	hypothetical protein	-
IJ09_RS13140 (IJ09_13375)	ssbA	2605258..2605737 (+)	480	WP_012951949.1	single-stranded DNA-binding protein	Machinery gene
IJ09_RS13145 (IJ09_13380)	-	2605759..2606136 (+)	378	WP_012951948.1	hypothetical protein	-
IJ09_RS13150 (IJ09_13385)	-	2606164..2606346 (+)	183	WP_031645468.1	hypothetical protein	-
IJ09_RS13155 (IJ09_13390)	-	2606291..2606695 (+)	405	WP_012951947.1	DUF1064 domain-containing protein	-
IJ09_RS13160 (IJ09_13395)	-	2606699..2607082 (+)	384	WP_012951946.1	DUF2481 family protein	-
IJ09_RS13165 (IJ09_13405)	-	2607223..2607657 (+)	435	WP_012951945.1	ArpU family phage packaging/lysis transcriptional regulator	-
IJ09_RS13170 (IJ09_13415)	-	2607943..2608170 (+)	228	WP_012951944.1	hypothetical protein	-
IJ09_RS13175 (IJ09_13420)	terS	2608210..2608950 (+)	741	WP_012951943.1	phage terminase small subunit	-
IJ09_RS13180 (IJ09_13425)	-	2608916..2610262 (+)	1347	WP_047934348.1	PBSX family phage terminase large subunit	-

Sequence

Protein

• Length: 159 a.a.
• Molecular weight: 17709.43 Da
• Isoelectric Point: 4.9838

>NTDB_id=127769 IJ09_RS13140 WP_012951949.1 2605258..2605737(+) (ssbA) [Listeria monocytogenes strain Lm60]
MMNRVVLVGRLTKDPDLRYTPAGAAVATFTLAVNRTFTNQNGEREADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAESVQFLESRNHAEGATSNNYQNQVNYSNNSQTSSYRADTSQKSDSFANEGKPIDINEDDLPF

Nucleotide

• Length: 480 bp

>NTDB_id=127769 IJ09_RS13140 WP_012951949.1 2605258..2605737(+) (ssbA) [Listeria monocytogenes strain Lm60]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACAAAAGATCCGGATTTACGTTACACTCCAGCGGGCGCGGCTGTTGC
GACTTTTACATTAGCAGTAAATAGAACATTCACTAATCAGAATGGAGAACGAGAAGCCGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGACGGTCGCGTACAGACTCGT
AATTATGAGGACAGCGACGGTAAACGTGTTTTCGTTACTGAGGTAGTTGCTGAATCAGTTCAATTCTTAGAGTCCAGAAA
CCACGCAGAAGGCGCTACATCGAATAATTATCAAAACCAAGTTAATTATTCAAATAACAGCCAAACAAGCTCATATCGAG
CGGATACGAGTCAGAAGAGCGATTCATTTGCAAACGAGGGCAAGCCGATAGATATTAATGAAGATGATTTGCCATTTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbA	Bacillus subtilis subsp. subtilis str. 168	65.116	100	0.704
ssb	Latilactobacillus sakei subsp. sakei 23K	60	100	0.642
ssbB	Bacillus subtilis subsp. subtilis str. 168	59.821	70.44	0.421