Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   IX88_RS03360 Genome accession   NZ_CP009256
Coordinates   703667..705088 (-) Length   473 a.a.
NCBI ID   WP_031999567.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB31     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 698667..710088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX88_RS03345 (IX88_03385) lptG 699720..700790 (+) 1071 WP_038405421.1 LPS export ABC transporter permease LptG -
  IX88_RS03350 (IX88_03390) gpmI 700916..702463 (+) 1548 WP_031999566.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  IX88_RS03355 (IX88_03395) - 702479..703663 (+) 1185 WP_000939107.1 S41 family peptidase -
  IX88_RS03360 (IX88_03400) pilR 703667..705088 (-) 1422 WP_031999567.1 sigma-54 dependent transcriptional regulator Regulator
  IX88_RS03365 (IX88_03405) pilS 705113..706681 (-) 1569 WP_005129877.1 PAS domain-containing sensor histidine kinase Regulator
  IX88_RS03370 (IX88_03410) - 706692..707327 (-) 636 WP_038405422.1 response regulator -
  IX88_RS03375 (IX88_03415) pbpG 707540..708586 (+) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  IX88_RS03380 (IX88_03420) thrC 708693..709832 (-) 1140 WP_000063593.1 threonine synthase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 52935.18 Da        Isoelectric Point: 6.7380

>NTDB_id=127661 IX88_RS03360 WP_031999567.1 703667..705088(-) (pilR) [Acinetobacter baumannii strain AB31]
MAEQQPLVLLVDDEEDLCLLMQMTLARMGIKTHLAYRVEQAKQLFTQFHYDACLTDLNLPDGSGLDLVKHVSQNYTNTPI
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQVHLDQLLQKALNRQKVEPDFAESALENKLLIGCSLPIQQLRIAIKKIARS
QAPVFVTGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLILSAHGGSLFLDE
IAELPLSMQVKLLRAVQEKKIRPVGSDQEIDVDFRVISASHQDLDLLVRQGKFRQDLFFRIHVMDLILPPLRERGEDVLL
LANHFIQKICMDWETPPKQLTEAAKTYLLQQHFPGNVRELRNMIERAITLSEDATIDISHLHPAPLRANISNPFASAAQS
IQTTVAAPQVVKKLPSEGLERYLENIEKDILLNALNMTHWNRTLAAKKLGMTFRSLRYRLKKFGLDTETEQEV

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=127661 IX88_RS03360 WP_031999567.1 703667..705088(-) (pilR) [Acinetobacter baumannii strain AB31]
ATGGCAGAACAGCAACCACTGGTTTTGCTTGTAGACGATGAAGAAGATTTGTGCCTATTGATGCAAATGACACTTGCACG
AATGGGGATTAAAACACATCTTGCTTATCGGGTTGAACAGGCCAAACAACTCTTCACACAGTTTCATTACGATGCATGTT
TAACCGATCTAAACTTACCCGATGGGAGTGGGTTAGACTTAGTCAAACATGTCTCTCAAAATTATACTAATACTCCCATT
GCAGTTTTAACTGCATACGGCAATATGGATATTGCAATTGCAGCATTAAAAGCAGGCGCTTTTGATTTTGTAAGCAAACC
GGTCAACCAAGTACATCTAGATCAATTATTACAAAAAGCCTTGAATCGGCAAAAAGTAGAGCCTGATTTTGCCGAGAGTG
CTTTAGAAAACAAATTATTAATCGGTTGTTCTCTGCCTATTCAACAATTACGCATCGCAATTAAAAAAATTGCTCGCTCT
CAAGCACCAGTATTTGTTACCGGTGAGTCTGGAACAGGTAAAGAAGTAGTTGCTAACTTAGTTCATCGGCTGAGTAACCG
TAGTGAAGGCCCTTTTATTGCAATTAACTGCGGTGCCATTCCAACCGAACTCATGGAAAGTGAGCTTTTTGGGCATAAAA
AAGGGAGCTTTACCGGAGCAACTCAAGATAAACAAGGCCTCATTTTATCGGCACACGGTGGCAGTTTATTTTTAGATGAA
ATTGCCGAATTACCTTTAAGTATGCAGGTCAAACTGCTCCGCGCAGTACAGGAAAAAAAGATCCGACCTGTCGGTTCAGA
TCAGGAAATCGATGTTGATTTCCGTGTAATTAGTGCAAGTCATCAAGATTTAGATTTATTGGTTAGACAAGGTAAATTCC
GTCAAGATTTATTCTTCCGTATTCATGTTATGGACCTCATATTGCCACCTCTACGTGAACGTGGCGAAGATGTCCTTTTA
CTAGCCAATCACTTTATTCAGAAAATTTGTATGGATTGGGAAACGCCACCTAAACAATTAACAGAAGCGGCCAAAACTTA
TCTGCTACAGCAACACTTTCCGGGTAATGTTCGCGAATTAAGAAATATGATTGAGCGCGCAATTACCTTAAGTGAAGATG
CCACCATAGATATATCTCATTTACATCCTGCTCCTCTAAGAGCGAATATTTCTAATCCTTTTGCTTCGGCTGCTCAAAGC
ATACAAACCACTGTGGCAGCTCCTCAAGTCGTAAAAAAATTACCAAGTGAAGGTCTAGAACGTTATTTAGAAAATATTGA
AAAAGATATTTTACTCAATGCACTCAATATGACTCATTGGAATCGTACCTTAGCAGCTAAAAAATTAGGAATGACTTTCC
GCTCTTTACGCTATCGTCTGAAAAAATTTGGCTTAGATACGGAGACAGAACAGGAAGTATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(141-306)

Response regulator receiver domain (Response_reg)

(8-117)

Bacterial regulatory protein, Fis family (HTH_8)

(423-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

98.097

100

0.981
  pilR Pseudomonas aeruginosa PAK

51.198

97.04

0.497

Multiple sequence alignment