Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   IX88_RS00715 Genome accession   NZ_CP009256
Coordinates   139844..140584 (-) Length   246 a.a.
NCBI ID   WP_038405377.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain AB31     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 134844..145584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX88_RS00695 (IX88_00705) aroB 135386..136468 (-) 1083 WP_038405376.1 3-dehydroquinate synthase -
  IX88_RS00700 (IX88_00710) aroK 136497..137066 (-) 570 WP_000643712.1 shikimate kinase AroK -
  IX88_RS00705 (IX88_00715) pilQ 137078..139243 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  IX88_RS00710 (IX88_00720) pilP 139306..139833 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  IX88_RS00715 (IX88_00725) pilO 139844..140584 (-) 741 WP_038405377.1 type 4a pilus biogenesis protein PilO Machinery gene
  IX88_RS00720 (IX88_00730) pilN 140581..141222 (-) 642 WP_000201224.1 PilN domain-containing protein Machinery gene
  IX88_RS00725 (IX88_00735) pilM 141222..142280 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  IX88_RS00730 (IX88_00740) ponA 142442..144997 (+) 2556 WP_038405378.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27831.58 Da        Isoelectric Point: 4.8357

>NTDB_id=127652 IX88_RS00715 WP_038405377.1 139844..140584(-) (pilO) [Acinetobacter baumannii strain AB31]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTIHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGTTDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=127652 IX88_RS00715 WP_038405377.1 139844..140584(-) (pilO) [Acinetobacter baumannii strain AB31]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTGCAACTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATTCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGACAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

99.187

100

0.992
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683

Multiple sequence alignment