Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   IX88_RS00590 Genome accession   NZ_CP009256
Coordinates   111701..112519 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain AB31     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 106701..117519
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX88_RS00575 (IX88_00585) pilE 106918..107343 (-) 426 WP_031999633.1 type IV pilin protein Machinery gene
  IX88_RS00580 (IX88_00590) pilY2 107340..107822 (-) 483 WP_001046424.1 type IV pilin protein Machinery gene
  IX88_RS00585 (IX88_00595) pilY1 107835..111689 (-) 3855 WP_000768946.1 PilC/PilY family type IV pilus protein Machinery gene
  IX88_RS00590 (IX88_00600) pilX 111701..112519 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IX88_RS00595 (IX88_00605) pilW 112516..113517 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  IX88_RS00600 (IX88_00610) pilV 113518..114078 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IX88_RS00605 (IX88_00615) fimU 114072..114545 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IX88_RS00610 (IX88_00620) ispH 114715..115665 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IX88_RS00615 (IX88_00625) gmk 115788..116417 (+) 630 WP_000015937.1 guanylate kinase -
  IX88_RS00620 (IX88_00630) rpoZ 116490..116768 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IX88_RS18420 - 116807..116937 (+) 131 Protein_125 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=127645 IX88_RS00590 WP_000149374.1 111701..112519(-) (pilX) [Acinetobacter baumannii strain AB31]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=127645 IX88_RS00590 WP_000149374.1 111701..112519(-) (pilX) [Acinetobacter baumannii strain AB31]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment