Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IX88_RS00605 Genome accession   NZ_CP009256
Coordinates   114072..114545 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain AB31     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 109072..119545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX88_RS00590 (IX88_00600) pilX 111701..112519 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IX88_RS00595 (IX88_00605) pilW 112516..113517 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  IX88_RS00600 (IX88_00610) pilV 113518..114078 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  IX88_RS00605 (IX88_00615) fimU 114072..114545 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  IX88_RS00610 (IX88_00620) ispH 114715..115665 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IX88_RS00615 (IX88_00625) gmk 115788..116417 (+) 630 WP_000015937.1 guanylate kinase -
  IX88_RS00620 (IX88_00630) rpoZ 116490..116768 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IX88_RS18420 - 116807..116937 (+) 131 Protein_125 hypothetical protein -
  IX88_RS00625 (IX88_00635) - 116977..119082 (+) 2106 WP_001117590.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=127648 IX88_RS00605 WP_001214065.1 114072..114545(-) (fimU) [Acinetobacter baumannii strain AB31]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=127648 IX88_RS00605 WP_001214065.1 114072..114545(-) (fimU) [Acinetobacter baumannii strain AB31]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1

Multiple sequence alignment