Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   IX88_RS00235 Genome accession   NZ_CP009256
Coordinates   36274..36909 (+) Length   211 a.a.
NCBI ID   WP_000472267.1    Uniprot ID   N9K0C6
Organism   Acinetobacter baumannii strain AB31     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 31274..41909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IX88_RS00220 (IX88_00225) adeT2 32334..33320 (-) 987 WP_000712902.1 putative multidrug efflux protein AdeT2 -
  IX88_RS00225 (IX88_00230) - 33400..34215 (-) 816 WP_000547772.1 NAD-dependent epimerase/dehydratase family protein -
  IX88_RS00230 (IX88_00235) recG 34236..36281 (+) 2046 WP_000204953.1 ATP-dependent DNA helicase RecG -
  IX88_RS00235 (IX88_00240) comF 36274..36909 (+) 636 WP_000472267.1 ComF family protein Machinery gene
  IX88_RS00240 (IX88_00245) - 36912..37313 (-) 402 WP_000849704.1 NUDIX domain-containing protein -
  IX88_RS00245 (IX88_00250) - 37328..37909 (-) 582 WP_001084309.1 TIGR00730 family Rossman fold protein -
  IX88_RS00250 (IX88_00255) - 38067..39080 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  IX88_RS00255 (IX88_00260) - 39150..39437 (-) 288 WP_000250997.1 lipid asymmetry maintenance protein MlaB -
  IX88_RS00260 (IX88_00265) - 39449..40090 (-) 642 WP_001093907.1 phospholipid-binding protein MlaC -
  IX88_RS00265 (IX88_00270) - 40117..40797 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -
  IX88_RS00270 (IX88_00275) mlaE 40797..41573 (-) 777 WP_001091949.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24572.77 Da        Isoelectric Point: 9.8358

>NTDB_id=127641 IX88_RS00235 WP_000472267.1 36274..36909(+) (comF) [Acinetobacter baumannii strain AB31]
MFKFLNPQYLFQLLSPCLLCEIGKREKYPLCKECWEQLPWLKQTIQRNDQSVLVACHYAYPINRIIQQFKYEQKLHYQTL
LAEVLQQLKFPKVQAIVPMPISKQRLTERGFNQSLLLANLLGKQLKIPVWQPVQRLNEHSQKGLSRLERFENIEQQFVAL
TQEKRRYRRVLIIDDVITTGSSIHALSQALKQLGCTSIHASCLAAASSTSY

Nucleotide


Download         Length: 636 bp        

>NTDB_id=127641 IX88_RS00235 WP_000472267.1 36274..36909(+) (comF) [Acinetobacter baumannii strain AB31]
ATGTTTAAGTTTTTAAACCCACAGTATCTTTTTCAGTTGCTGTCCCCTTGCCTACTTTGCGAAATAGGAAAACGGGAAAA
ATATCCTCTTTGTAAAGAATGCTGGGAACAGCTACCGTGGCTTAAGCAAACCATTCAGCGCAATGACCAGTCTGTTCTTG
TGGCCTGTCACTACGCCTATCCAATTAACCGGATTATTCAGCAGTTTAAATATGAACAAAAATTACATTACCAAACCTTA
CTCGCTGAAGTTTTACAGCAATTAAAATTTCCTAAGGTACAAGCGATTGTACCCATGCCTATTTCTAAACAACGTTTAAC
TGAACGTGGTTTTAATCAATCCTTATTACTCGCCAATCTTTTGGGTAAGCAATTAAAAATACCAGTTTGGCAGCCTGTAC
AACGCTTAAATGAGCATTCTCAAAAGGGATTATCTCGACTCGAAAGATTTGAAAATATTGAACAGCAATTTGTTGCGCTC
ACTCAAGAAAAACGGCGTTATCGTCGTGTGCTGATTATTGATGATGTAATCACAACAGGAAGTTCAATTCACGCTTTAAG
TCAGGCGCTAAAACAGCTAGGGTGTACATCTATTCATGCCAGTTGTCTAGCTGCTGCTTCATCTACATCATATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(161-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K0C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii D1279779

98.578

100

0.986
  comF Acinetobacter baumannii strain A118

98.578

100

0.986

Multiple sequence alignment