Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   LM850658_RS13200 Genome accession   NZ_CP009242
Coordinates   2633297..2633779 (-) Length   160 a.a.
NCBI ID   WP_050897674.1    Uniprot ID   -
Organism   Listeria monocytogenes strain LM850658     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2628297..2638779
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM850658_RS13155 (LM850658_13315) - 2628524..2629855 (-) 1332 WP_050897668.1 PBSX family phage terminase large subunit -
  LM850658_RS13160 (LM850658_13320) - 2629824..2630366 (-) 543 WP_009912949.1 terminase small subunit -
  LM850658_RS13165 (LM850658_13325) - 2630408..2630593 (-) 186 WP_050897669.1 hypothetical protein -
  LM850658_RS13170 (LM850658_13330) - 2630690..2631253 (-) 564 WP_258014479.1 hypothetical protein -
  LM850658_RS13175 (LM850658_13340) - 2631614..2632048 (-) 435 WP_050897671.1 ArpU family phage packaging/lysis transcriptional regulator -
  LM850658_RS13180 (LM850658_13345) - 2632067..2632231 (-) 165 WP_003727776.1 hypothetical protein -
  LM850658_RS15170 - 2632242..2632367 (-) 126 WP_262834673.1 hypothetical protein -
  LM850658_RS13185 (LM850658_13355) - 2632360..2632743 (-) 384 WP_050897672.1 DUF2481 family protein -
  LM850658_RS13190 (LM850658_13360) - 2632747..2633151 (-) 405 WP_050897673.1 DUF1064 domain-containing protein -
  LM850658_RS13195 (LM850658_13365) - 2633096..2633278 (-) 183 WP_031645649.1 hypothetical protein -
  LM850658_RS13200 (LM850658_13370) ssbA 2633297..2633779 (-) 483 WP_050897674.1 single-stranded DNA-binding protein Machinery gene
  LM850658_RS13205 (LM850658_13375) - 2633776..2634177 (-) 402 WP_012582392.1 hypothetical protein -
  LM850658_RS13210 (LM850658_13380) - 2634189..2634416 (-) 228 WP_012582391.1 ASCH/PUA domain-containing protein -
  LM850658_RS13215 (LM850658_13385) - 2634409..2634624 (-) 216 WP_014589140.1 hypothetical protein -
  LM850658_RS13220 (LM850658_13390) - 2634606..2634806 (-) 201 WP_012582389.1 hypothetical protein -
  LM850658_RS13225 (LM850658_13395) - 2634828..2635211 (-) 384 WP_012582388.1 hypothetical protein -
  LM850658_RS13230 (LM850658_13400) - 2635208..2635669 (-) 462 WP_012582387.1 hypothetical protein -
  LM850658_RS15095 (LM850658_13405) - 2635666..2635839 (-) 174 WP_012582386.1 hypothetical protein -
  LM850658_RS13240 (LM850658_13410) - 2635840..2636229 (-) 390 WP_012582385.1 YopX family protein -
  LM850658_RS13245 (LM850658_13415) - 2636246..2636539 (-) 294 WP_012581477.1 hypothetical protein -
  LM850658_RS13250 (LM850658_13420) - 2636536..2636724 (-) 189 WP_010991288.1 hypothetical protein -
  LM850658_RS13255 (LM850658_13425) - 2636717..2637115 (-) 399 WP_010991289.1 hypothetical protein -
  LM850658_RS13260 (LM850658_13430) dcm 2637112..2638392 (-) 1281 WP_014589047.1 DNA (cytosine-5-)-methyltransferase -
  LM850658_RS15195 (LM850658_13435) - 2638389..2638670 (-) 282 WP_014589141.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17810.54 Da        Isoelectric Point: 4.6529

>NTDB_id=127595 LM850658_RS13200 WP_050897674.1 2633297..2633779(-) (ssbA) [Listeria monocytogenes strain LM850658]
MMNRVVLVGRLTKDPDLRYTPAGVAVATFTLAVNRAFTNQNGEREADFIQCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDSDGKRVFVTEVVAESVQFLEPKNNNAEGDTSNNYQNQANYSNNNQTSSYRADTSQKSDSFANEGKPIDISDDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=127595 LM850658_RS13200 WP_050897674.1 2633297..2633779(-) (ssbA) [Listeria monocytogenes strain LM850658]
ATGATGAATCGTGTAGTACTTGTAGGACGACTAACGAAAGACCCGGATTTAAGATACACACCAGCAGGCGTAGCTGTTGC
GACTTTTACGCTAGCTGTAAATCGTGCTTTCACTAATCAGAATGGAGAACGAGAAGCCGATTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCGGAAAATGTTGCTAATTTCTTGAAGAAAGGAAGCATGGCGGGCGTTGATGGTCGAATACAGACTCGA
AATTATGAGGATAGCGACGGTAAACGCGTTTTTGTTACGGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
TAACAACGCAGAAGGCGATACATCGAATAATTACCAAAATCAAGCTAATTATTCAAACAACAATCAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGTGATTCATTTGCGAATGAGGGTAAGCCGATAGATATTTCAGATGATGATTTGCCATTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.279

100

0.712
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.177

70.625

0.425

Multiple sequence alignment