Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   SAH002_RS09020 Genome accession   NZ_CP011329
Coordinates   1796186..1796695 (-) Length   169 a.a.
NCBI ID   WP_000392200.1    Uniprot ID   Q8DXT4
Organism   Streptococcus agalactiae strain H002     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1791186..1801695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAH002_RS08995 (SAH002_09010) tsaD 1791699..1792709 (-) 1011 WP_000655087.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  SAH002_RS09000 (SAH002_09015) rimI 1792785..1793192 (-) 408 WP_000445945.1 ribosomal protein S18-alanine N-acetyltransferase -
  SAH002_RS09005 (SAH002_09020) tsaB 1793194..1793886 (-) 693 WP_000978604.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  SAH002_RS09010 (SAH002_09025) - 1794065..1794295 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  SAH002_RS09015 (SAH002_09030) rnjA 1794349..1796028 (+) 1680 WP_000065498.1 ribonuclease J1 -
  SAH002_RS09020 (SAH002_09035) lytF 1796186..1796695 (-) 510 WP_000392200.1 CHAP domain-containing protein Regulator
  SAH002_RS09025 (SAH002_09040) glnA 1796843..1798189 (-) 1347 WP_000156227.1 type I glutamate--ammonia ligase -
  SAH002_RS09030 (SAH002_09045) - 1798223..1798594 (-) 372 WP_000664338.1 MerR family transcriptional regulator -
  SAH002_RS09035 (SAH002_09050) - 1798674..1799213 (-) 540 WP_000854121.1 aromatic acid exporter family protein -
  SAH002_RS09040 (SAH002_09055) - 1799476..1800672 (-) 1197 WP_001096753.1 phosphoglycerate kinase -
  SAH002_RS09045 (SAH002_09060) - 1800807..1801676 (-) 870 WP_000858929.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18390.30 Da        Isoelectric Point: 4.3039

>NTDB_id=127495 SAH002_RS09020 WP_000392200.1 1796186..1796695(-) (lytF) [Streptococcus agalactiae strain H002]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASADYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=127495 SAH002_RS09020 WP_000392200.1 1796186..1796695(-) (lytF) [Streptococcus agalactiae strain H002]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGATTATACAGTAGGGACACAACCGCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTAACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8DXT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

56.818

78.107

0.444
  lytF Streptococcus gordonii str. Challis substr. CH1

56.818

78.107

0.444
  SMU.836 Streptococcus mutans UA159

54.331

75.148

0.408

Multiple sequence alignment