Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CR44_RS05520 Genome accession   NZ_CP009226
Coordinates   1130704..1131471 (-) Length   255 a.a.
NCBI ID   WP_039362573.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1125704..1136471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR44_RS05490 (CR44_05575) tatB 1126000..1126455 (+) 456 WP_023385380.1 Sec-independent protein translocase protein TatB -
  CR44_RS05495 (CR44_05580) tatC 1126455..1127210 (+) 756 WP_023385382.1 twin-arginine translocase subunit TatC -
  CR44_RS05500 (CR44_05585) queA 1127207..1128226 (+) 1020 WP_023385384.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CR44_RS05505 (CR44_05590) - 1128237..1129487 (+) 1251 WP_039362567.1 hypothetical protein -
  CR44_RS05510 (CR44_05595) - 1129462..1130325 (-) 864 WP_023385388.1 SAM-dependent methyltransferase -
  CR44_RS05515 (CR44_05600) dprB 1130333..1130707 (-) 375 WP_023385389.1 Holliday junction resolvase RuvX Machinery gene
  CR44_RS05520 (CR44_05605) dprA 1130704..1131471 (-) 768 WP_039362573.1 DNA-processing protein DprA Machinery gene
  CR44_RS08850 - 1131455..1132618 (-) 1164 WP_023385393.1 divergent polysaccharide deacetylase family protein -
  CR44_RS05530 (CR44_05615) ilvC 1132619..1133641 (-) 1023 WP_023385395.1 ketol-acid reductoisomerase -
  CR44_RS05535 (CR44_05620) - 1133788..1134600 (+) 813 WP_039362576.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 28172.24 Da        Isoelectric Point: 5.1410

>NTDB_id=127377 CR44_RS05520 WP_039362573.1 1130704..1131471(-) (dprA) [Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1]
MDFITDILSLKKLKKPVNRLYYKGNLELLNFPKVAIVGSRKCTSYTKNLVLNLASTLKNYGICVVSGAAIGADIHAHEGA
FPNTIAVFGNGLDNIYPAQNSKMIEKIYKDALALSEYEPNALATPWSFLERNRIVVALSDAVIIAEADMKSGSMSSARLA
LDMGIPLFVLPQRLNESNGTNDLLSKNRANLISDFDEFASKFGSLNSDLSKDDVLEFIKTNQNFDECYARFGDALYEYEL
DGKISIDGVYVRLLS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=127377 CR44_RS05520 WP_039362573.1 1130704..1131471(-) (dprA) [Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1]
ATGGACTTTATAACTGATATTTTAAGCTTAAAAAAGCTAAAAAAACCTGTAAATAGACTATACTATAAAGGAAATTTAGA
ACTTTTAAATTTCCCTAAAGTAGCGATAGTTGGCTCAAGAAAATGCACTTCTTATACAAAAAATCTTGTTTTAAATTTAG
CTTCTACTCTTAAAAATTACGGTATTTGCGTAGTGAGCGGAGCTGCTATAGGCGCTGATATACATGCTCACGAAGGTGCT
TTTCCAAACACCATCGCAGTTTTTGGAAATGGACTTGATAACATATATCCAGCTCAAAACTCAAAAATGATAGAAAAAAT
TTATAAAGATGCGTTAGCTCTTAGCGAGTATGAGCCTAATGCTCTTGCGACTCCTTGGAGTTTTTTAGAAAGAAATAGGA
TAGTCGTAGCTCTAAGCGACGCCGTGATAATAGCAGAAGCAGATATGAAAAGTGGATCAATGTCTAGTGCAAGACTTGCT
TTGGATATGGGAATTCCTCTTTTTGTGTTGCCTCAAAGACTTAATGAGAGTAATGGAACAAATGATCTGCTTAGTAAAAA
CAGAGCAAATTTAATATCTGATTTTGATGAGTTTGCTTCTAAATTTGGAAGTCTAAATAGTGATTTGAGCAAAGACGATG
TTTTGGAGTTTATAAAAACAAATCAAAACTTTGATGAGTGTTACGCGAGATTTGGAGACGCTTTGTATGAATATGAACTA
GATGGTAAAATCTCTATAGATGGAGTATATGTAAGGCTTTTATCTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(10-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.17

92.157

0.518
  dprA Helicobacter pylori 26695

48.75

94.118

0.459

Multiple sequence alignment