Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CR44_RS05515 Genome accession   NZ_CP009226
Coordinates   1130333..1130707 (-) Length   124 a.a.
NCBI ID   WP_023385389.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1125333..1135707
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CR44_RS05490 (CR44_05575) tatB 1126000..1126455 (+) 456 WP_023385380.1 Sec-independent protein translocase protein TatB -
  CR44_RS05495 (CR44_05580) tatC 1126455..1127210 (+) 756 WP_023385382.1 twin-arginine translocase subunit TatC -
  CR44_RS05500 (CR44_05585) queA 1127207..1128226 (+) 1020 WP_023385384.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CR44_RS05505 (CR44_05590) - 1128237..1129487 (+) 1251 WP_039362567.1 hypothetical protein -
  CR44_RS05510 (CR44_05595) - 1129462..1130325 (-) 864 WP_023385388.1 SAM-dependent methyltransferase -
  CR44_RS05515 (CR44_05600) dprB 1130333..1130707 (-) 375 WP_023385389.1 Holliday junction resolvase RuvX Machinery gene
  CR44_RS05520 (CR44_05605) dprA 1130704..1131471 (-) 768 WP_039362573.1 DNA-processing protein DprA Machinery gene
  CR44_RS08850 - 1131455..1132618 (-) 1164 WP_023385393.1 divergent polysaccharide deacetylase family protein -
  CR44_RS05530 (CR44_05615) ilvC 1132619..1133641 (-) 1023 WP_023385395.1 ketol-acid reductoisomerase -
  CR44_RS05535 (CR44_05620) - 1133788..1134600 (+) 813 WP_039362576.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13650.08 Da        Isoelectric Point: 8.4775

>NTDB_id=127376 CR44_RS05515 WP_023385389.1 1130333..1130707(-) (dprB) [Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DAEIIYVDEAYSSCEASELSKDSKDGKFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=127376 CR44_RS05515 WP_023385389.1 1130333..1130707(-) (dprB) [Campylobacter fetus subsp. testudinum strain pet-3 isolate pet-3-1]
TTGATAGTAGCTATCGATGTTGGACTAAAAAGAATAGGAGTTGCGGTTGCTGTTTTGCCGACTGTTGTGCTTCCTAGTGA
GCCTATTTTACGTAAAAATCGCAATCAAGCAGCAAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCAACAAAACTAG
TAGTTGGTTTGCCAAAAGGCGGTAGCTGCGAAGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTGGTGGGTTTT
GATGCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGTGAATTATCCAAAGATTCTAAAGATGGCAA
ATTTGATAGTATCGCTGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

49.612

100

0.516

Multiple sequence alignment