Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ASU1_RS08805 Genome accession   NZ_CP009159
Coordinates   1917748..1918392 (+) Length   214 a.a.
NCBI ID   WP_015674037.1    Uniprot ID   K0FZ56
Organism   Actinobacillus suis ATCC 33415     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1912748..1923392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ASU1_RS08760 (ASU1_08610) rplP 1912809..1913219 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  ASU1_RS08765 (ASU1_08615) rpsC 1913233..1913937 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  ASU1_RS08770 (ASU1_08620) rplV 1913956..1914288 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  ASU1_RS08775 (ASU1_08625) rpsS 1914299..1914574 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  ASU1_RS08780 (ASU1_08630) rplB 1914602..1915423 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  ASU1_RS08785 (ASU1_08635) rplW 1915444..1915749 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  ASU1_RS08790 (ASU1_08640) rplD 1915746..1916348 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  ASU1_RS08795 (ASU1_08645) rplC 1916364..1916990 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  ASU1_RS08800 (ASU1_08650) rpsJ 1917016..1917327 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  ASU1_RS08805 (ASU1_08655) sxy/tfoX 1917748..1918392 (+) 645 WP_015674037.1 TfoX/Sxy family DNA transformation protein Regulator
  ASU1_RS08810 (ASU1_08660) rpsT 1918446..1918709 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  ASU1_RS08815 (ASU1_08665) murJ 1919116..1920684 (+) 1569 WP_015674038.1 murein biosynthesis integral membrane protein MurJ -
  ASU1_RS08820 (ASU1_08670) - 1920706..1921773 (+) 1068 WP_039195458.1 MFS transporter -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 25045.35 Da        Isoelectric Point: 9.8688

>NTDB_id=127158 ASU1_RS08805 WP_015674037.1 1917748..1918392(+) (sxy/tfoX) [Actinobacillus suis ATCC 33415]
MKYTTKELERLKALLSPLGEVTFKPYFSFLGIFKNDTMFALYKDQHLYVRKSAQYLEEITQTISIHFLVDRHINCRSKIF
YLLPSSILNNLQTYSHWITSAIHEYQQSKAKIENQNQNKIRMLPNLNISIERLLAKVGIYTVTDLKATGAINVFVRLIQQ
GLEATALLLFKLYSAIQYKYIYMLTEQEKQNLLIEADNALYQAGLRKRFMLCVK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=127158 ASU1_RS08805 WP_015674037.1 1917748..1918392(+) (sxy/tfoX) [Actinobacillus suis ATCC 33415]
ATGAAATACACAACAAAGGAGTTAGAAAGACTTAAAGCGCTATTGTCCCCTCTCGGGGAGGTGACCTTTAAGCCTTATTT
TTCATTCTTAGGTATCTTTAAAAACGATACCATGTTTGCCCTCTACAAAGATCAACATTTATATGTACGCAAATCAGCCC
AATATTTAGAAGAAATAACTCAAACAATATCGATTCATTTTCTGGTTGATCGTCATATCAACTGTCGTTCCAAAATATTT
TATCTTCTTCCTTCCTCAATTCTTAACAACCTACAAACTTACTCTCACTGGATCACTTCAGCCATTCACGAATATCAACA
ATCTAAAGCAAAAATTGAAAATCAAAATCAAAACAAAATTCGTATGTTACCAAACTTAAATATCAGTATTGAGAGATTAT
TGGCTAAAGTCGGTATTTATACAGTAACAGATTTAAAAGCGACAGGTGCTATTAACGTTTTTGTACGTTTAATCCAGCAA
GGTTTGGAAGCAACCGCATTGTTATTATTTAAACTATATAGTGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAACAGAATTTATTAATTGAAGCCGACAATGCGCTTTATCAAGCAGGATTACGGAAAAGATTCATGCTGTGCGTAA
AATAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K0FZ56

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

100

100

1
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

63.721

100

0.64
  sxy/tfoX Glaesserella parasuis strain SC1401

41.429

98.131

0.407

Multiple sequence alignment