Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   JL26_RS09225 Genome accession   NZ_CP009158
Coordinates   1866200..1866838 (-) Length   212 a.a.
NCBI ID   WP_005711167.1    Uniprot ID   B8F752
Organism   Glaesserella parasuis strain SH03     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861200..1871838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JL26_RS09210 (JL26_09465) - 1862406..1863164 (-) 759 WP_038514874.1 esterase family protein -
  JL26_RS09215 (JL26_09470) - 1863299..1864477 (-) 1179 WP_021113239.1 ATP-grasp domain-containing protein -
  JL26_RS09220 (JL26_09475) fumC 1864659..1866053 (-) 1395 WP_010786461.1 class II fumarate hydratase -
  JL26_RS09225 (JL26_09480) sxy/tfoX 1866200..1866838 (-) 639 WP_005711167.1 TfoX/Sxy family protein Regulator
  JL26_RS09230 (JL26_09485) rpsJ 1867296..1867607 (+) 312 WP_001181005.1 30S ribosomal protein S10 -
  JL26_RS09235 (JL26_09490) rplC 1867624..1868250 (+) 627 WP_005711168.1 50S ribosomal protein L3 -
  JL26_RS09240 (JL26_09495) rplD 1868266..1868868 (+) 603 WP_005711169.1 50S ribosomal protein L4 -
  JL26_RS09245 (JL26_09500) rplW 1868865..1869170 (+) 306 WP_005711171.1 50S ribosomal protein L23 -
  JL26_RS09250 (JL26_09505) rplB 1869191..1870012 (+) 822 WP_005711173.1 50S ribosomal protein L2 -
  JL26_RS09255 (JL26_09510) rpsS 1870041..1870316 (+) 276 WP_005539416.1 30S ribosomal protein S19 -
  JL26_RS09260 (JL26_09515) rplV 1870327..1870659 (+) 333 WP_038514881.1 50S ribosomal protein L22 -
  JL26_RS09265 (JL26_09520) rpsC 1870677..1871381 (+) 705 WP_010786465.1 30S ribosomal protein S3 -
  JL26_RS09270 (JL26_09525) rplP 1871394..1871804 (+) 411 WP_006249357.1 50S ribosomal protein L16 -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24705.70 Da        Isoelectric Point: 9.4406

>NTDB_id=127135 JL26_RS09225 WP_005711167.1 1866200..1866838(-) (sxy/tfoX) [Glaesserella parasuis strain SH03]
MKYIDAKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAKNLSLLLDSQTGINLKSF
YLIPPDLLNDLQQVSHWVVESVKDILHTKQNQYMEKKKCIRTLPNMTIQLERTLKKLGVYSIDDLVDRGEIDIFVNLLKI
GVDADQALLFRLHGAINRQYIYTISDKTKQNLLNDADNALYAAGLRKRFNTR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=127135 JL26_RS09225 WP_005711167.1 1866200..1866838(-) (sxy/tfoX) [Glaesserella parasuis strain SH03]
ATGAAATACATTGATGCAAAAACACAACATATCCGTAATCTTCTTTACCCAATCATTGGCGAAACGAAAGCAAAAACCTA
TTTTTCCTATTATGGAATAATGAAAGATAAAGCTATGTTTGCTTTATACAAAGATGATAAATTCTATCTACACATACCAA
ATCATTGCTTAGAGGAAAACATAGCTAAAAATTTATCTCTTCTTCTCGACTCTCAGACTGGCATTAATCTAAAATCCTTC
TATTTAATCCCTCCCGATCTACTTAATGACTTACAACAAGTTTCACATTGGGTCGTCGAAAGTGTGAAAGATATTCTCCA
TACGAAACAAAATCAGTATATGGAAAAGAAAAAATGTATTCGGACGCTGCCGAATATGACAATACAACTCGAAAGGACAT
TAAAAAAACTAGGTGTCTACTCTATTGATGATTTAGTAGATAGGGGCGAGATTGATATTTTCGTCAACCTCCTTAAAATA
GGTGTTGATGCTGATCAAGCTTTATTATTTCGACTTCATGGAGCAATAAATCGACAATATATCTATACGATTTCAGACAA
AACAAAGCAGAATTTACTCAATGATGCAGATAATGCCTTGTATGCTGCCGGACTCCGAAAGCGATTTAATACTAGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-103)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

73.239

100

0.736
  sxy/tfoX Actinobacillus suis H91-0380

43.128

99.528

0.429
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

38.647

97.642

0.377

Multiple sequence alignment