Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexB   Type   Machinery gene
Locus tag   WV34_RS09210 Genome accession   NZ_CP011252
Coordinates   1796518..1798395 (+) Length   625 a.a.
NCBI ID   WP_088612828.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1791518..1803395
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS09195 (WV34_08995) ymcA 1792570..1793001 (+) 432 WP_045506081.1 RicAFT regulatory complex protein RicA family protein Regulator
  WV34_RS09200 (WV34_09000) cotE 1793256..1793801 (+) 546 WP_013352324.1 outer spore coat protein CotE -
  WV34_RS09205 (WV34_09005) hexA 1793917..1796502 (+) 2586 WP_088613855.1 DNA mismatch repair protein MutS Machinery gene
  WV34_RS09210 (WV34_09010) hexB 1796518..1798395 (+) 1878 WP_088612828.1 DNA mismatch repair endonuclease MutL Machinery gene
  WV34_RS09215 (WV34_09015) - 1798861..1799537 (+) 677 Protein_1758 MBL fold metallo-hydrolase -
  WV34_RS09220 (WV34_09020) fabD 1799852..1800721 (+) 870 WP_088612829.1 ACP S-malonyltransferase -
  WV34_RS09225 (WV34_09025) - 1800856..1801830 (+) 975 WP_088612830.1 acyltransferase domain-containing protein -

Sequence

Protein


Download         Length: 625 a.a.        Molecular weight: 70248.43 Da        Isoelectric Point: 5.9382

>NTDB_id=126798 WV34_RS09210 WP_088612828.1 1796518..1798395(+) (hexB) [Bacillus amyloliquefaciens strain MT45]
MAKVIQLSDELSNKIAAGEVVERPASVVKELVENAIDANSTVIEIDIEEAGLSSIRVLDNGEGMETEDCKRAFRRHATSK
IKDENDLFRVRTLGFRGEALPSIASVSHLEIKTSIGEGAGTHLILQGGNMISEQRSSSRKGTEIIVTNLFFNTPARLKYM
KTVHTELGNITDVVNRIALAHPEVSIRLRHQGKNLLQTNGNGDVRHVLAAIYGTAVAKKMIPLHVSSLDFEVKGYIALPE
ITRASRNYMSSVINGRYIKNFPLVKAVHEGYHTLLPIGRHPITFIEITMDPILVDVNVHPSKLEVRLSKETELHELIRDG
IKEVFQKQRLIPSAQLPKKSAPAPIKNEQQIMTFGESEPERKLPEKMSEPSYSPMKLSSVVKEPAPVTEEEFQPNEAVHE
VPPETSVPETAAPVSDIPAPEEEAVSEEIQEERVPVMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGQV
EPEVQDMIVPLTFHYAANEALIIEQHQHELESVGVFLEAFGTNSYIVRCHPAWFPKGEEAELIEEIIQQVLDAKQIDIKK
LREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRRTADPFTCPHGRPIIIHHSTYEMEKMFKRVM

Nucleotide


Download         Length: 1878 bp        

>NTDB_id=126798 WV34_RS09210 WP_088612828.1 1796518..1798395(+) (hexB) [Bacillus amyloliquefaciens strain MT45]
TTGGCAAAAGTCATCCAGCTGTCAGATGAGCTTTCAAATAAAATAGCGGCCGGTGAGGTGGTGGAACGGCCCGCCTCTGT
CGTTAAAGAATTGGTGGAAAACGCTATCGACGCAAACAGCACAGTCATTGAAATCGATATAGAGGAAGCGGGGCTTTCGT
CGATTCGGGTGCTCGACAACGGCGAAGGTATGGAAACCGAGGATTGCAAGCGGGCTTTCCGCCGCCACGCGACCAGTAAA
ATCAAAGATGAAAATGACCTGTTCCGGGTGAGAACACTCGGTTTCCGCGGAGAAGCTTTGCCAAGTATCGCGTCTGTTTC
TCATCTGGAAATCAAAACGAGCATCGGCGAGGGAGCGGGAACTCATCTCATTCTTCAGGGCGGGAATATGATTTCTGAAC
AGAGATCTTCCAGCAGAAAAGGAACGGAGATCATCGTGACTAACCTGTTTTTCAATACACCCGCCAGATTAAAATATATG
AAAACCGTGCATACGGAGCTCGGCAATATTACGGATGTCGTCAACCGGATCGCCCTTGCGCATCCGGAAGTATCGATCCG
CCTCCGCCATCAAGGGAAAAACCTGCTGCAGACAAACGGAAACGGTGACGTGCGCCATGTGCTGGCCGCAATTTACGGGA
CGGCGGTTGCGAAAAAAATGATACCGCTCCATGTCAGCTCACTTGATTTTGAAGTCAAGGGCTACATTGCGCTGCCGGAA
ATCACGCGTGCTTCCAGAAACTACATGTCATCTGTCATTAACGGAAGATACATTAAGAATTTCCCGCTTGTAAAAGCGGT
GCATGAGGGTTATCACACGCTTCTGCCGATCGGCCGCCATCCGATTACGTTTATCGAAATTACGATGGATCCGATTTTAG
TCGATGTCAATGTCCATCCGTCGAAGCTTGAAGTCCGCCTCAGCAAAGAGACGGAACTGCATGAGCTGATCCGTGACGGC
ATAAAGGAAGTTTTTCAAAAGCAACGGCTTATTCCAAGCGCCCAGCTTCCGAAAAAATCAGCGCCGGCACCGATCAAAAA
TGAACAGCAAATTATGACGTTCGGTGAAAGTGAGCCTGAGCGGAAACTGCCTGAAAAAATGTCTGAGCCGTCTTACTCAC
CAATGAAGCTGAGTTCGGTCGTAAAAGAGCCGGCGCCGGTAACAGAAGAAGAGTTTCAACCAAATGAAGCGGTTCATGAA
GTGCCGCCGGAGACCAGCGTGCCGGAAACGGCTGCGCCTGTTTCCGATATTCCGGCGCCGGAAGAGGAAGCTGTCTCCGA
AGAAATACAGGAAGAAAGAGTTCCGGTCATGTATCCGATCGGCCAAATGCACGGGACATATATTTTAGCCCAAAATGAAA
ACGGCCTTTATATCATTGACCAGCATGCGGCCCAAGAGCGGATTAAATACGAATATTTCCGGGAAAAAGTCGGGCAGGTT
GAGCCTGAAGTGCAGGATATGATCGTGCCGCTTACCTTTCACTATGCGGCAAATGAAGCGCTTATCATTGAACAGCATCA
GCATGAGCTTGAAAGTGTAGGGGTATTTTTAGAAGCTTTCGGCACTAACAGCTATATCGTCCGCTGCCATCCGGCCTGGT
TTCCAAAAGGGGAAGAAGCTGAACTGATTGAAGAAATCATTCAGCAGGTGCTTGACGCCAAACAGATCGACATTAAAAAA
CTTCGGGAGGAAGCCGCCATAATGATGAGCTGCAAAGGCTCGATCAAAGCGAACCGTCATTTGCGCAACGATGAAATCAA
AGCGCTCTTGGACGATCTGCGCCGAACGGCAGACCCGTTCACATGCCCGCACGGCCGGCCGATCATTATTCACCATAGCA
CGTATGAGATGGAAAAGATGTTTAAACGCGTGATGTAG

Domains

Predicted by InterProScan.

DNA mismatch repair protein, C-terminal domain (DNA_mis_repair)

(209-325)

MutL C terminal dimerisation domain (MutL_C)

(440-581)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c_3)

(25-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexB Streptococcus pneumoniae R6

46.357

100

0.478