Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexA   Type   Machinery gene
Locus tag   WV34_RS09205 Genome accession   NZ_CP011252
Coordinates   1793917..1796502 (+) Length   861 a.a.
NCBI ID   WP_088613855.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1788917..1801502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS09185 (WV34_08985) - 1789720..1790895 (+) 1176 WP_088612827.1 glycine C-acetyltransferase -
  WV34_RS09190 (WV34_08990) miaB 1791038..1792567 (+) 1530 WP_007611533.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  WV34_RS09195 (WV34_08995) ymcA 1792570..1793001 (+) 432 WP_045506081.1 RicAFT regulatory complex protein RicA family protein Regulator
  WV34_RS09200 (WV34_09000) cotE 1793256..1793801 (+) 546 WP_013352324.1 outer spore coat protein CotE -
  WV34_RS09205 (WV34_09005) hexA 1793917..1796502 (+) 2586 WP_088613855.1 DNA mismatch repair protein MutS Machinery gene
  WV34_RS09210 (WV34_09010) hexB 1796518..1798395 (+) 1878 WP_088612828.1 DNA mismatch repair endonuclease MutL Machinery gene
  WV34_RS09215 (WV34_09015) - 1798861..1799537 (+) 677 Protein_1758 MBL fold metallo-hydrolase -
  WV34_RS09220 (WV34_09020) fabD 1799852..1800721 (+) 870 WP_088612829.1 ACP S-malonyltransferase -

Sequence

Protein


Download         Length: 861 a.a.        Molecular weight: 97556.88 Da        Isoelectric Point: 5.3592

>NTDB_id=126797 WV34_RS09205 WP_088613855.1 1793917..1796502(+) (hexA) [Bacillus amyloliquefaciens strain MT45]
MASYTPMIQQYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSADKIPMCGVPYHSAAAYIEQLIKK
GYKVAICEQTEDPKAAKGVVKREVVQLITPGTVMDGKGIHESENNFIASVSAFPGGYGLALSDLTTGENLAVFIERIEDV
MSEIYSVGAKEIVVSSKFDENTAAQLKERCGATISIEDGKMTERIEIAKHLPGEELTETFMRLYTYLQKTQKRSLDHLQP
VQVYELEEAMKIDLYSKRNLELTETIRSKSKKGSLLWLLDETKTAMGGRLLKQWIDRPLIRASQIEERQEMVETLINHLF
EREDLRERLKEVYDLERLAGRVAFGNVNARDLIQLKESLKQVPSIKELVGSLNHKKAKERAGLIDPCGDLLDLLEDALHE
NPPLSLKEGNLIKDGYHQKLDEYRDASKNGKDWIARLEQQERAYTGIRSLKVGFNKVFGYYIEVTKANLHLLEDGRYERK
QTLTNAERYITPELKEKEALILEAENNICELEYELFAGLREKVKQFIPRLQRLAKQMSELDALQCFATISENRHYTKPVF
SDNEVKVIEGRHPVVEKVMDSQEYVPNNCLMGESREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQ
IFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHEL
TVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDDLISRAQEILKQLEQSGDKPELPAAPEKK
PAVKEEPAQLSFFADGEKEQKAPAVSHKEKQVLEAFKSINILDMTPLEAMNEMYKLQKKLK

Nucleotide


Download         Length: 2586 bp        

>NTDB_id=126797 WV34_RS09205 WP_088613855.1 1793917..1796502(+) (hexA) [Bacillus amyloliquefaciens strain MT45]
ATGGCTAGTTACACGCCTATGATACAGCAATACTTGAAGATAAAGGCAGAATACCAAGATGCCTTTTTATTTTTTCGGCT
TGGTGACTTTTATGAAATGTTTTTTGAAGATGCAAAAAAAGCGTCACAAGAGCTTGAAATTACACTGACAAGCAGGGACG
GAGGATCGGCTGATAAAATTCCGATGTGCGGCGTGCCGTATCATTCCGCGGCGGCTTATATTGAACAGCTGATTAAAAAG
GGCTATAAAGTGGCGATCTGTGAGCAGACGGAAGATCCGAAGGCGGCCAAAGGCGTTGTCAAAAGAGAAGTCGTCCAGCT
GATCACACCGGGAACCGTGATGGACGGAAAAGGCATTCATGAGTCGGAAAACAATTTTATCGCTTCCGTTTCCGCATTTC
CTGGCGGATACGGCCTCGCTTTATCAGACTTAACGACTGGAGAAAACCTGGCCGTATTTATTGAACGGATTGAAGATGTC
ATGTCAGAAATTTATTCAGTCGGCGCAAAGGAAATTGTCGTATCAAGCAAGTTTGATGAAAATACGGCGGCCCAGCTGAA
AGAAAGGTGCGGCGCAACGATTTCCATCGAAGACGGGAAAATGACAGAACGGATTGAAATCGCAAAGCACTTGCCTGGCG
AAGAGCTGACAGAGACGTTTATGCGTTTATATACGTATTTGCAGAAGACGCAAAAACGGAGTCTGGATCACCTGCAGCCG
GTTCAAGTGTATGAATTGGAAGAAGCGATGAAAATTGATCTGTATTCAAAACGGAATCTTGAACTGACGGAAACGATCCG
TTCGAAAAGCAAAAAAGGGTCACTGCTCTGGCTTTTGGACGAGACGAAAACAGCAATGGGCGGCAGGCTCCTCAAACAAT
GGATTGACCGCCCGCTGATCAGGGCATCCCAAATCGAAGAACGTCAAGAAATGGTCGAGACGCTGATCAATCATCTGTTT
GAGCGTGAAGATCTGCGCGAACGCCTGAAGGAAGTGTATGATTTGGAGCGTCTTGCGGGCCGGGTCGCATTCGGAAACGT
CAATGCAAGGGATTTAATCCAGCTGAAAGAATCGTTAAAACAGGTGCCGAGCATTAAAGAGCTTGTAGGGTCTCTTAACC
ATAAAAAAGCAAAAGAACGCGCCGGCTTGATTGACCCGTGCGGAGATCTGCTTGACCTGTTAGAAGATGCGCTGCATGAA
AACCCGCCGTTATCTTTAAAAGAAGGCAACTTAATAAAAGACGGCTATCATCAGAAGCTCGATGAGTACCGTGACGCCAG
CAAAAACGGCAAAGACTGGATTGCCAGACTGGAGCAGCAGGAACGCGCGTATACGGGCATCCGTTCATTAAAGGTCGGCT
TTAATAAAGTGTTCGGCTATTATATTGAAGTCACAAAAGCAAACCTTCATCTCCTTGAGGACGGGCGGTATGAGCGGAAG
CAGACGCTCACAAACGCCGAACGGTACATTACGCCGGAATTAAAGGAAAAAGAAGCGCTTATTTTAGAAGCGGAAAACAA
CATTTGCGAGCTGGAATATGAGCTTTTTGCCGGACTGCGTGAAAAGGTTAAGCAATTTATTCCGCGCCTGCAGCGTCTAG
CCAAGCAAATGAGTGAGCTCGACGCACTGCAATGCTTTGCAACGATCAGTGAAAACAGGCATTACACAAAGCCCGTCTTT
TCCGATAATGAGGTAAAAGTCATTGAAGGCAGACATCCTGTCGTTGAAAAGGTGATGGACAGTCAAGAATATGTGCCGAA
CAATTGCCTGATGGGCGAATCACGGGAAATGCTCCTGATTACGGGTCCGAATATGTCAGGTAAAAGCACGTACATGAGAC
AGATCGCACTTCTATCAATCATGGCCCAGATCGGCTGTTTTGTGCCCGCAAAAGAAGCGGTTCTGCCGATTTTTGATCAA
ATCTTTACGAGAATCGGGGCTGCGGACGATTTGATCTCCGGACAAAGCACCTTTATGGTGGAAATGCTGGAAGCGAAAAA
CGCGATCGTAAACGCCACAAAAGACAGCCTGATCCTGTTCGATGAAATCGGACGCGGGACGTCAACGTATGACGGAATGG
CGCTGGCACAGGCGATTATTGAATATGTTCATGATCATATCGGCGCTAAAACACTGTTTAGCACGCATTATCATGAACTG
ACGGTGCTTGAAGATAAGCTTCCTCAGCTGAAAAACGTTCATGTGCGCGCCGAGGAATATAACGGAACGGTCGTGTTTCT
CCATCAAATCAAAGAAGGAGCCGCCGATAAAAGTTACGGCATTCATGTCGCCCAGCTTGCCGAGCTCCCGGATGATCTGA
TCAGCCGCGCGCAGGAGATTCTGAAACAGCTAGAGCAGTCAGGAGATAAACCGGAGCTTCCGGCGGCACCTGAGAAAAAG
CCCGCCGTCAAGGAAGAACCGGCACAGCTGTCCTTTTTTGCAGACGGTGAAAAAGAACAGAAAGCACCAGCTGTTTCTCA
TAAAGAAAAACAAGTGCTTGAAGCCTTTAAGTCGATCAATATTCTTGATATGACGCCTCTTGAGGCGATGAATGAAATGT
ACAAGCTGCAAAAAAAATTAAAATAG

Domains

Predicted by InterProScan.

MutS domain V (MutS_V)

(598-785)

MutS family domain IV (MutS_IV)

(415-506)

MutS domain III (MutS_III)

(258-547)

MutS domain I (MutS_I)

(5-116)

MutS domain II (MutS_II)

(125-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

48.308

99.535

0.481
  mutS Pseudomonas stutzeri strain ATCC 17587

38.505

100

0.395