Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   WV34_RS09195 Genome accession   NZ_CP011252
Coordinates   1792570..1793001 (+) Length   143 a.a.
NCBI ID   WP_045506081.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain MT45     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1787570..1798001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WV34_RS09175 (WV34_08975) spoVS 1788141..1788401 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  WV34_RS09180 (WV34_08980) tdh 1788658..1789704 (+) 1047 WP_088612826.1 L-threonine 3-dehydrogenase -
  WV34_RS09185 (WV34_08985) - 1789720..1790895 (+) 1176 WP_088612827.1 glycine C-acetyltransferase -
  WV34_RS09190 (WV34_08990) miaB 1791038..1792567 (+) 1530 WP_007611533.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  WV34_RS09195 (WV34_08995) ymcA 1792570..1793001 (+) 432 WP_045506081.1 RicAFT regulatory complex protein RicA family protein Regulator
  WV34_RS09200 (WV34_09000) cotE 1793256..1793801 (+) 546 WP_013352324.1 outer spore coat protein CotE -
  WV34_RS09205 (WV34_09005) hexA 1793917..1796502 (+) 2586 WP_088613855.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16114.26 Da        Isoelectric Point: 5.0213

>NTDB_id=126796 WV34_RS09195 WP_045506081.1 1792570..1793001(+) (ymcA) [Bacillus amyloliquefaciens strain MT45]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSVIINQIKALQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSF

Nucleotide


Download         Length: 432 bp        

>NTDB_id=126796 WV34_RS09195 WP_045506081.1 1792570..1793001(+) (ymcA) [Bacillus amyloliquefaciens strain MT45]
ATGACGCTTTACTCTAAGAAAGACATTGTACAGCAGGCCAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAATGAAAATGAAAAAGTCTCTGTGATTATTAATCAGATTAAAGCCCTGCAAA
AGCAAGCCGTTAACCTGAAGCATTACGAAAAGCTTGAAGCTTTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTTAATGACCTTCTTCAGCTTGTCGCTCA
CACGATTTCCAATCAGGTGACAAACGAAATCATTACGTCTACCGGCGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTTTTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

92.308

100

0.923