Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   Ach5_RS08620 Genome accession   NZ_CP011246
Coordinates   1752546..1754651 (+) Length   701 a.a.
NCBI ID   WP_038491322.1    Uniprot ID   -
Organism   Agrobacterium tumefaciens strain Ach5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1747546..1759651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ach5_RS08605 (Ach5_17040) - 1747825..1748169 (-) 345 WP_038491319.1 hypothetical protein -
  Ach5_RS08610 (Ach5_17050) mfd 1748546..1752043 (-) 3498 WP_019566117.1 transcription-repair coupling factor -
  Ach5_RS08615 (Ach5_17060) - 1752047..1752358 (-) 312 WP_003515739.1 succinate dehydrogenase assembly factor 2 -
  Ach5_RS08620 (Ach5_17070) recG 1752546..1754651 (+) 2106 WP_038491322.1 ATP-dependent DNA helicase RecG Machinery gene
  Ach5_RS08625 (Ach5_17080) - 1754664..1754936 (+) 273 WP_003515743.1 hypothetical protein -
  Ach5_RS08630 (Ach5_17090) - 1754991..1755248 (+) 258 WP_003515745.1 type II toxin-antitoxin system prevent-host-death family antitoxin -
  Ach5_RS08635 (Ach5_17100) - 1755245..1755628 (+) 384 WP_038491325.1 type II toxin-antitoxin system VapC family toxin -
  Ach5_RS08640 (Ach5_17110) - 1755632..1756300 (-) 669 WP_003515749.1 DUF502 domain-containing protein -
  Ach5_RS08645 (Ach5_17120) - 1756314..1756817 (-) 504 WP_038491328.1 N-acetyltransferase -
  Ach5_RS08650 (Ach5_17130) glmS 1756814..1758640 (-) 1827 WP_003515753.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 701 a.a.        Molecular weight: 76547.20 Da        Isoelectric Point: 7.1162

>NTDB_id=126711 Ach5_RS08620 WP_038491322.1 1752546..1754651(+) (recG) [Agrobacterium tumefaciens strain Ach5]
MRPAILDPLFASVSTLAGVGPKLADLLAKLLSRENADDTRVIDLLFHAPSNVIDRRNRPGIALAAPGAIVTIQGRVDRHQ
PAPPGNRSAPYRVFLHDETGELALTFFRAKGDWLSKALPVDEEVLVSGKVDWFNGRASMVHPDFMVKLSEAENLPLVEAV
YPMTAGLSPKVLRRAIEGGLSKLPVFPEWIDETLKTRQGFGDVASSFRELHDPRDSADIDPQAPARRRLAYDEFLAGQLS
LALVRQRLRKVAGQPIRAKGDIAAKILSQLPFSLTPSQNASVKDILTDMASEDRMLRLLQGDVGAGKTLVALMAMATAVE
AGGQAVLMAPTEILARQHFATISKLANAVGITVEVLTGRTKGKERREIEERVASGEAQIVIGTHALFQDSVSYKNLVLAV
VDEQHRFGVHQRLRLTAKGITPHMLVMTATPIPRTLVLAAFGDMDVSKLTEKPAGRKPIQTVTIPTERIGDIVERLRAAL
KEGKKAYWICPLVEETEESDLMSAEERHAVLSQMLGANIGLIHGRMSGPEKDAAMLAFKNGETRLLVATTVVEVGVDVPD
ATIMVIEHAERFGLAQLHQLRGRVGRGDEASTCILLYKGPLSENGRARLSILRDSEDGFLIAEEDLKLRGEGELLGTRQS
GTPGFRIASLEAHADLLEIARKDAAYVIERDPELTGPRGESLRTLLYLHRRDEAIRFLHAG

Nucleotide


Download         Length: 2106 bp        

>NTDB_id=126711 Ach5_RS08620 WP_038491322.1 1752546..1754651(+) (recG) [Agrobacterium tumefaciens strain Ach5]
ATGCGTCCCGCCATTCTCGATCCGCTATTTGCTTCCGTCTCCACCCTTGCCGGTGTGGGGCCGAAGCTTGCCGACCTTCT
GGCCAAACTGCTGAGCCGGGAAAATGCCGACGACACCCGCGTGATCGATCTTCTGTTCCACGCGCCATCAAACGTCATCG
ACCGGCGCAACCGCCCGGGCATCGCGCTTGCCGCTCCCGGCGCCATTGTCACCATCCAGGGACGTGTCGACCGGCATCAG
CCAGCTCCACCAGGCAATCGTTCCGCGCCCTACCGTGTTTTCCTGCATGACGAGACCGGGGAACTGGCGCTGACCTTCTT
CCGCGCCAAGGGAGACTGGCTTTCCAAGGCCTTACCCGTCGATGAAGAGGTTCTCGTCAGCGGCAAGGTGGACTGGTTCA
ACGGCCGCGCCTCCATGGTGCATCCGGATTTCATGGTGAAGCTCTCCGAGGCCGAGAACCTGCCGCTGGTCGAAGCCGTT
TATCCGATGACAGCCGGGCTGTCTCCGAAGGTGCTGCGGCGGGCAATTGAAGGCGGGCTTTCGAAACTGCCGGTCTTTCC
CGAATGGATCGACGAAACGCTCAAGACCCGTCAGGGTTTCGGCGACGTGGCATCGAGCTTCCGTGAGTTGCACGATCCGC
GCGACAGCGCCGATATCGATCCTCAGGCCCCGGCACGCAGACGGCTCGCCTACGACGAATTCCTGGCCGGGCAGCTGTCA
CTGGCGCTGGTGCGGCAAAGACTGCGCAAGGTCGCGGGCCAGCCGATCCGCGCCAAGGGGGACATTGCTGCAAAAATCCT
GTCGCAACTGCCCTTCTCCCTGACGCCGAGCCAGAATGCCTCGGTGAAAGATATCCTGACCGATATGGCCAGCGAGGACC
GTATGTTGCGGCTGTTGCAAGGCGATGTCGGCGCGGGCAAGACGCTGGTGGCGCTGATGGCTATGGCAACCGCCGTCGAG
GCCGGAGGGCAGGCGGTGTTGATGGCCCCGACCGAAATTCTTGCCCGGCAGCATTTCGCCACCATCTCCAAACTCGCCAA
TGCCGTGGGCATTACGGTTGAGGTGCTGACCGGCCGCACCAAGGGCAAGGAGCGTCGCGAGATCGAAGAACGCGTGGCCT
CCGGTGAGGCACAGATCGTCATCGGCACCCACGCGCTGTTCCAGGACAGCGTGAGTTACAAGAACCTCGTGCTGGCCGTG
GTGGATGAGCAGCACCGTTTCGGCGTACACCAGCGCCTGCGTCTCACCGCCAAGGGCATCACGCCGCATATGCTTGTTAT
GACCGCCACGCCCATTCCGCGCACGCTGGTGCTGGCCGCCTTCGGCGACATGGATGTGTCGAAACTCACCGAAAAACCGG
CCGGCCGAAAACCGATCCAGACCGTGACAATCCCCACAGAGCGCATCGGCGACATCGTCGAGCGGCTGCGCGCCGCGCTG
AAGGAGGGCAAGAAGGCCTACTGGATCTGCCCGCTGGTGGAGGAGACGGAAGAGTCCGACCTGATGTCGGCGGAAGAACG
ACATGCGGTTCTCTCGCAGATGCTCGGTGCCAATATCGGTCTCATCCATGGGCGCATGAGCGGCCCTGAGAAGGACGCCG
CCATGCTGGCTTTCAAGAACGGCGAAACCCGGCTGCTGGTTGCAACGACAGTGGTGGAAGTGGGTGTCGACGTTCCGGAC
GCCACGATCATGGTCATCGAACATGCCGAACGTTTCGGCCTGGCCCAGCTTCACCAGCTGCGTGGCCGGGTTGGACGCGG
TGACGAGGCCTCCACCTGCATCCTGCTCTATAAGGGGCCGCTCAGCGAAAACGGCCGCGCCCGACTTTCCATCCTGCGCG
ACAGCGAGGACGGCTTCCTGATTGCCGAAGAGGATTTGAAGCTGCGCGGCGAAGGCGAACTCCTCGGCACCCGCCAGTCC
GGAACCCCGGGCTTCCGCATCGCCAGCCTCGAAGCCCATGCCGATCTCCTGGAAATCGCCCGCAAGGACGCCGCCTATGT
CATCGAGCGCGACCCCGAACTGACCGGCCCGCGCGGCGAAAGCCTGCGCACCCTGCTCTATCTGCACCGCCGCGACGAAG
CTATCCGCTTCCTGCACGCCGGCTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(18-180)

Helicase conserved C-terminal domain (Helicase_C)

(474-587)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-681)

DEAD/DEAH box helicase (DEAD)

(275-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

42.169

94.722

0.399
  recG/mmsA Streptococcus pneumoniae R6

40.588

97.004

0.394
  recG/mmsA Streptococcus pneumoniae R36A

40.588

97.004

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

38.663

98.146

0.379