Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG/mmsA   Type   Machinery gene
Locus tag   SMQ301_RS08300 Genome accession   NZ_CP011217
Coordinates   1596202..1598220 (-) Length   672 a.a.
NCBI ID   WP_011681610.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain SMQ-301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1591202..1603220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMQ301_RS08275 (SMQ301_1722) - 1592669..1592881 (-) 213 WP_002884695.1 helix-turn-helix domain-containing protein -
  SMQ301_RS08280 (SMQ301_1723) - 1592891..1593499 (-) 609 WP_011681606.1 DUF2975 domain-containing protein -
  SMQ301_RS10315 (SMQ301_1725) - 1593791..1594126 (-) 336 WP_011681607.1 hypothetical protein -
  SMQ301_RS08290 (SMQ301_1726) - 1594439..1595305 (-) 867 WP_224103241.1 Abi family protein -
  SMQ301_RS08300 (SMQ301_1727) recG/mmsA 1596202..1598220 (-) 2019 WP_011681610.1 ATP-dependent DNA helicase RecG Machinery gene
  SMQ301_RS08305 (SMQ301_1728) alr 1598349..1599452 (-) 1104 WP_011681611.1 alanine racemase -
  SMQ301_RS08310 (SMQ301_1729) acpS 1599473..1599832 (-) 360 WP_011681612.1 holo-ACP synthase -
  SMQ301_RS08315 (SMQ301_1730) - 1599836..1600867 (-) 1032 WP_002947699.1 3-deoxy-7-phosphoheptulonate synthase -
  SMQ301_RS08320 (SMQ301_1731) - 1600965..1601996 (-) 1032 WP_011681613.1 3-deoxy-7-phosphoheptulonate synthase -

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 75577.17 Da        Isoelectric Point: 6.4089

>NTDB_id=126663 SMQ301_RS08300 WP_011681610.1 1596202..1598220(-) (recG/mmsA) [Streptococcus thermophilus strain SMQ-301]
MIQLDSPIADLKGFGPKSAEKFTKLDLHTVGDLLLYFPFRYEDFKSKSIFELMDGEKAVITGTVVTPANVQYYGFKRNRL
SFKIKQGEAVIAINFFNQPYLVDKFEVGAEVAIFGKWDRKKSAVTGMKVLAHVEDDMQPVYHVAQGVSQAQLIKAIKVAF
DSGALNLLEESLPQVLMDKYRLMGRQEAVRVMHFPKDLAEYKQALRRIKFEELFYFQMNLQVLKAENKSETNGLAISYDE
VKIKAKIATLPFPLTKAQERSLSEILADMKSGAHMNRLLQGDVGSGKTVIASLAMYGAYTAGLQSALMVPTEILAEQHYQ
SLKGLFPELKVVLLTSGMKMADKKVALSKIESGEAQMIVGTHSLIQDAVIYHKLGLVITDEQHRFGVNQRRIFREKGDNP
DVLMMTATPIPRTLAITAFGEMDVSIIDQMPAGRKTIITRWVKHEQLDTVLTWIKSELEKDAQVYFISPLIEESESLDLK
NAVALHQELTEFFGDSATVALMHGRMKNDEKDQIMQDFKDKKSQILVSTTVIEVGVNVPNATVMVIMDADRFGLSQLHQL
RGRVGRGDKQSYCVLVANPKNDTGKKRMQAMCETTDGFVLAEEDLKMRGSGEIFGTRQSGIPEFQVADIVEDYNILEEAR
RVASQIVSDPNWRENPDWQVLEAHLRNQAEFD

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=126663 SMQ301_RS08300 WP_011681610.1 1596202..1598220(-) (recG/mmsA) [Streptococcus thermophilus strain SMQ-301]
ATGATTCAACTAGATTCACCAATTGCGGATTTGAAGGGCTTTGGTCCTAAGTCCGCTGAAAAATTTACCAAATTAGATTT
ACACACAGTTGGGGACCTCTTGCTTTATTTTCCTTTTCGATATGAAGATTTTAAGAGTAAGTCCATCTTTGAACTGATGG
ATGGAGAAAAGGCCGTCATTACAGGAACAGTGGTAACACCGGCCAATGTGCAGTATTATGGCTTTAAACGTAATCGTCTT
AGCTTTAAAATAAAGCAGGGTGAAGCTGTGATTGCCATTAATTTCTTTAATCAGCCTTATCTTGTGGACAAGTTTGAGGT
GGGGGCAGAAGTGGCTATCTTTGGTAAGTGGGACCGTAAGAAGTCTGCAGTGACTGGTATGAAAGTCTTGGCCCATGTTG
AGGACGATATGCAGCCAGTCTACCATGTGGCTCAGGGTGTTAGTCAGGCCCAGCTGATAAAGGCTATAAAGGTAGCTTTT
GACAGTGGCGCCCTTAATTTGTTGGAGGAAAGTCTCCCCCAAGTGCTGATGGACAAGTATCGTCTCATGGGACGTCAAGA
GGCTGTGCGTGTCATGCATTTTCCTAAAGATTTGGCTGAATATAAGCAGGCCCTACGTAGGATTAAGTTTGAGGAGCTCT
TTTATTTCCAGATGAATTTACAGGTGCTAAAGGCTGAGAATAAATCAGAGACCAATGGACTAGCGATTTCTTACGATGAG
GTAAAAATAAAAGCCAAGATTGCTACCCTTCCTTTCCCTCTGACCAAAGCCCAGGAGCGCAGTTTATCAGAAATCCTAGC
TGATATGAAATCTGGGGCTCACATGAACCGTCTCTTGCAGGGAGACGTGGGCTCAGGAAAGACAGTTATTGCTAGTCTTG
CCATGTATGGGGCTTATACGGCAGGATTGCAGTCTGCCCTTATGGTGCCGACGGAAATCTTAGCAGAGCAGCATTATCAG
AGTTTGAAGGGACTTTTTCCTGAGCTAAAGGTAGTCCTCTTAACTTCTGGGATGAAGATGGCAGATAAGAAAGTAGCTCT
TTCTAAAATTGAGTCTGGGGAGGCTCAAATGATTGTGGGAACTCACTCACTGATTCAGGATGCGGTGATTTATCATAAAC
TTGGGTTGGTGATTACTGATGAACAGCACCGATTTGGAGTTAATCAACGTCGTATTTTCCGAGAGAAGGGAGACAATCCT
GATGTCCTCATGATGACAGCAACACCCATTCCTAGGACCTTGGCAATCACTGCCTTTGGGGAGATGGATGTGTCAATCAT
TGATCAGATGCCGGCTGGACGTAAGACTATTATTACCCGTTGGGTTAAACATGAGCAACTAGACACCGTATTGACTTGGA
TTAAGAGTGAGTTGGAAAAAGATGCTCAGGTCTATTTTATTTCTCCTTTGATTGAAGAGTCTGAGTCTCTTGATTTGAAA
AATGCTGTTGCCCTTCATCAGGAACTCACAGAGTTTTTTGGAGATTCAGCTACGGTGGCTCTGATGCATGGTCGGATGAA
AAATGATGAAAAAGACCAAATTATGCAGGATTTTAAGGACAAAAAATCTCAGATTTTAGTATCAACCACAGTTATTGAAG
TTGGAGTTAACGTACCTAATGCTACGGTTATGGTCATTATGGATGCGGATCGTTTTGGACTTAGCCAGCTTCACCAGCTT
CGAGGCCGTGTAGGGCGTGGAGACAAGCAGTCTTACTGTGTCTTGGTGGCTAATCCTAAAAATGATACCGGTAAAAAACG
CATGCAGGCCATGTGTGAGACTACGGATGGTTTTGTTTTAGCAGAAGAGGACCTTAAAATGCGTGGCTCAGGAGAGATTT
TCGGGACGCGGCAGTCAGGCATTCCTGAATTTCAGGTGGCTGATATTGTGGAAGACTATAATATCCTAGAAGAAGCAAGG
CGCGTGGCCAGTCAAATTGTTTCTGACCCTAACTGGCGTGAGAATCCTGATTGGCAGGTGCTAGAAGCTCATTTGAGAAA
CCAAGCTGAGTTTGACTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(255-412)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(594-667)

Helicase conserved C-terminal domain (Helicase_C)

(457-567)

RecG wedge domain (RecG_wedge)

(11-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG/mmsA Streptococcus pneumoniae R6

71.088

99.851

0.71
  recG/mmsA Streptococcus pneumoniae R36A

71.088

99.851

0.71
  recG Bacillus subtilis subsp. subtilis str. 168

50

99.107

0.496
  recG Neisseria meningitidis strain C311

39.079

100

0.391