Detailed information NTG0126058

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: AMD10_RS16865
• Genome accession: NZ_CP009007
• Coordinates: 3814711..3816105 (+)
• Length: 464 a.a.
• NCBI ID: WP_015463522.1
• Uniprot ID: A0A7S6YVA4
• Organism: Xanthomonas citri pv. citri strain MF20
• Function: regulate pilin expression (predicted from homology) Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	3795899..3821657	3814711..3816105	within	0

Gene organization within MGE regions

Location: 3795899..3821657

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AMD10_RS23980 (J172_03398)	-	3795899..3797066 (+)	1168	Protein_3219	IS3 family transposase	-
AMD10_RS16795 (J172_03400)	avrXacE2	3797826..3798896 (-)	1071	WP_011052114.1	type III secretion system effector avirulence protein AvrXacE2	-
AMD10_RS16800 (J172_03401)	-	3798981..3800258 (-)	1278	WP_011052115.1	lytic murein transglycosylase	-
AMD10_RS16805 (J172_03402)	-	3800391..3803381 (-)	2991	WP_040107658.1	Tn3-like element TnXax1 family transposase	-
AMD10_RS16810 (J172_03403)	-	3803390..3804664 (-)	1275	Protein_3223	site-specific integrase	-
AMD10_RS16820 (J172_03405)	-	3804857..3805933 (+)	1077	WP_011052118.1	DNA-binding protein	-
AMD10_RS16825 (J172_03406)	xopAI	3806067..3806957 (+)	891	WP_011052119.1	type III secretion system effector XopAI	-
AMD10_RS16830 (J172_03407)	-	3807377..3808183 (-)	807	WP_015463520.1	hypothetical protein	-
AMD10_RS16835 (J172_03408)	-	3808288..3808572 (+)	285	WP_016849322.1	hypothetical protein	-
AMD10_RS16840 (J172_03409)	-	3808800..3809915 (+)	1116	WP_011052122.1	IS1595 family transposase	-
AMD10_RS16845 (J172_03410)	-	3809870..3810385 (-)	516	WP_011052123.1	hypothetical protein	-
AMD10_RS16850 (J172_03411)	sucD	3810472..3811347 (-)	876	WP_005921370.1	succinate--CoA ligase subunit alpha	-
AMD10_RS16855 (J172_03412)	sucC	3811372..3812541 (-)	1170	WP_005915812.1	ADP-forming succinate--CoA ligase subunit beta	-
AMD10_RS16860 (J172_03413)	-	3812773..3814386 (+)	1614	WP_003488599.1	HAMP domain-containing sensor histidine kinase	-
AMD10_RS16865 (J172_03414)	pilR	3814711..3816105 (+)	1395	WP_015463522.1	sigma-54 dependent transcriptional regulator	Regulator
AMD10_RS16870 (J172_03416)	-	3816328..3816495 (-)	168	WP_015463523.1	hypothetical protein	-
AMD10_RS16875 (J172_03417)	pilB	3816627..3816746 (-)	120	WP_005915819.1	hypothetical protein	Machinery gene
AMD10_RS16880 (J172_03418)	pilB	3817240..3818976 (-)	1737	WP_011052125.1	type IV-A pilus assembly ATPase PilB	Machinery gene
AMD10_RS16885 (J172_03419)	-	3819040..3819495 (-)	456	WP_015463526.1	pilin	-
AMD10_RS16890 (J172_03420)	-	3819605..3820045 (-)	441	WP_011052127.1	pilin	-
AMD10_RS16895 (J172_03421)	pilC	3820401..3821657 (+)	1257	WP_040107659.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50105.56 Da
• Isoelectric Point: 6.6973

>NTDB_id=126058 AMD10_RS16865 WP_015463522.1 3814711..3816105(+) (pilR) [Xanthomonas citri pv. citri strain MF20]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSSAMEILRATISKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALNHYGFPGNVRELGNILERALALAEDDQISATDLRLPAHGGHRLAAPPGGAA
AEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=126058 AMD10_RS16865 WP_015463522.1 3814711..3816105(+) (pilR) [Xanthomonas citri pv. citri strain MF20]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGTGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGCAT
GGGCCTGCGCATCAGCACTGCTGCCAACCTGGCCGAAGCGCGCGAGTTGCTGGCCAACAATCCCTACGATCTGTGCCTGA
CCGACATGCGTTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCAAAACACTATCCGCAGACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCCGTGGAAGCACTGAAAGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
CGACATCGGCGTACTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCTGCTCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCAGTGCCATGGAAATCCTGCGCGCCACCATCAGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCACGCACCATCCACGAACAAGGCGC
ACGTGCCGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGCCGAGCTGATGGAAAGCGAATTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCGCATGCCGACAAGCCCGGGCTGTTCCAGGCCGCGCATGGAGGCACGCTGTTTCTGGAC
GAAGTGGCCGAATTGCCGTTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGACCGGTCGGCGC
ATCCAGCGAATCGCTGGTGGATGTGCGCATCCTCTCGGCCACCCACAAGGACCTGGGCGACCTGGTCTCCGACGGCCGCT
TTCGGCATGACCTGTACTACCGCATCAACGTGATCGAGTTGCGTGTGCCGCCGCTGCGCGAACGCGGTGGCGACCTGCCG
CAGCTGGCCGCTGCCATCATCGCGCGCCTGGCGCACAGCCACGGCCGCCCCATTCCGCTGCTGACCCAATCCGCACTCGA
CGCCTTGAATCACTACGGCTTCCCCGGCAACGTGCGCGAACTGGGAAACATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCTACCGACCTGCGCCTGCCCGCGCACGGGGGCCACCGGTTGGCCGCCCCCCCAGGAGGCGCCGCG
GCCGAACCGCGCGAAGCCGTCGTCGACATCGACCCCGCCTCGGCCGCGCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACTGCTGCGCAGTTGGGCATCACGTTTCGGGCGC
TGCGTTACAAGCTGAAGAAGCTGGGGATGGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-114)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

3D structure

• AlphaFold DB: A0A7S6YVA4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.851	99.784	0.627
pilR	Acinetobacter baumannii strain A118	49.138	100	0.491