Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   Y979_RS17990 Genome accession   NZ_CP011061
Coordinates   3632741..3633373 (+) Length   210 a.a.
NCBI ID   WP_000242761.1    Uniprot ID   -
Organism   Escherichia coli str. Sanji     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3627741..3638373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Y979_RS17960 (Y979_17985) yheS 3627910..3629823 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  Y979_RS17965 (Y979_17990) yheT 3629823..3630845 (+) 1023 WP_000057356.1 hydrolase -
  Y979_RS17970 (Y979_17995) yheU 3630839..3631057 (+) 219 WP_000907085.1 YheU family protein -
  Y979_RS17975 (Y979_18000) prkB 3631111..3631980 (+) 870 WP_001274680.1 phosphoribulokinase -
  Y979_RS17980 (Y979_18005) yhfA 3632035..3632439 (-) 405 WP_001148908.1 OsmC family protein -
  Y979_RS17990 (Y979_18015) crp 3632741..3633373 (+) 633 WP_000242761.1 cAMP-activated global transcriptional regulator CRP Regulator
  Y979_RS17995 (Y979_18020) yhfK 3633424..3635514 (+) 2091 WP_001295162.1 YccS/YhfK family putative transporter -
  Y979_RS18000 (Y979_18025) argD 3635581..3636801 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  Y979_RS18005 (Y979_18030) pabA 3636887..3637450 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  Y979_RS18010 (Y979_18035) fic 3637482..3638084 (-) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  Y979_RS18015 (Y979_18040) yhfG 3638074..3638241 (-) 168 WP_000736862.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23644.41 Da        Isoelectric Point: 8.2710

>NTDB_id=125878 Y979_RS17990 WP_000242761.1 3632741..3633373(+) (crp) [Escherichia coli str. Sanji]
MVLGKTQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=125878 Y979_RS17990 WP_000242761.1 3632741..3633373(+) (crp) [Escherichia coli str. Sanji]
ATGGTGCTTGGCAAAACGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.238

100

0.952
  crp Haemophilus influenzae Rd KW20

78.049

97.619

0.762
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467