Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG   Type   Machinery gene
Locus tag   MNA02_RS08850 Genome accession   NZ_CP010999
Coordinates   1692265..1692582 (-) Length   105 a.a.
NCBI ID   WP_011681685.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain MN-BM-A02     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1687265..1697582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MNA02_RS08815 (MNA02_1810) - 1687623..1688285 (-) 663 WP_011681679.1 CPBP family intramembrane glutamic endopeptidase -
  MNA02_RS08820 - 1688382..1688825 (-) 444 WP_011681680.1 hypothetical protein -
  MNA02_RS11810 (MNA02_1812) - 1688899..1689237 (-) 339 WP_224103197.1 CPBP family intramembrane glutamic endopeptidase -
  MNA02_RS11815 - 1689281..1689556 (-) 276 WP_011681681.1 hypothetical protein -
  MNA02_RS08835 - 1689568..1689766 (-) 199 Protein_1676 helix-turn-helix transcriptional regulator -
  MNA02_RS08840 (MNA02_1815) - 1690015..1691208 (-) 1194 WP_014608740.1 acetate kinase -
  MNA02_RS08845 (MNA02_1816) comGH 1691264..1692220 (-) 957 WP_011681684.1 class I SAM-dependent methyltransferase Machinery gene
  MNA02_RS08850 comGG 1692265..1692582 (-) 318 WP_011681685.1 competence type IV pilus minor pilin ComGG Machinery gene
  MNA02_RS08855 (MNA02_1818) comGF 1692560..1692997 (-) 438 WP_011681686.1 competence type IV pilus minor pilin ComGF Machinery gene
  MNA02_RS08860 comGE 1692981..1693274 (-) 294 WP_024704238.1 competence type IV pilus minor pilin ComGE Machinery gene
  MNA02_RS08865 (MNA02_1820) comGD 1693246..1693674 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  MNA02_RS08870 (MNA02_1821) comGC 1693634..1693960 (-) 327 WP_002946126.1 competence type IV pilus major pilin ComGC Machinery gene
  MNA02_RS08875 (MNA02_1822) comGB 1693957..1695057 (-) 1101 WP_120764773.1 competence type IV pilus assembly protein ComGB Machinery gene
  MNA02_RS08880 (MNA02_1823) comGA/cglA/cilD 1694939..1695880 (-) 942 WP_022096896.1 competence type IV pilus ATPase ComGA Machinery gene
  MNA02_RS08885 (MNA02_1824) - 1695961..1696323 (-) 363 WP_014622006.1 DUF1033 family protein -

Sequence


Protein


Download         Length: 105 a.a.        Molecular weight: 11851.01 Da        Isoelectric Point: 10.6334

>NTDB_id=125685 MNA02_RS08850 WP_011681685.1 1692265..1692582(-) (comGG) [Streptococcus thermophilus strain MN-BM-A02]
MLLKKQVRGGVLLYALFMAGIFILLLQVYLERVVASSRQNQAQIVASQSRLMAEMTMDLVDKEAGAFSFSQGTTTYEVKG
KQVVVRVVSKGQIKTYRYVKKQDQK

Nucleotide


Download         Length: 318 bp        

>NTDB_id=125685 MNA02_RS08850 WP_011681685.1 1692265..1692582(-) (comGG) [Streptococcus thermophilus strain MN-BM-A02]
ATGCTTTTGAAAAAACAGGTTAGGGGAGGCGTTCTTCTCTACGCTCTTTTTATGGCTGGCATTTTTATACTCCTTCTTCA
GGTTTATCTGGAACGGGTGGTAGCTAGCTCTAGACAAAACCAAGCGCAAATAGTGGCCAGTCAAAGCCGTCTCATGGCAG
AGATGACTATGGACTTGGTGGATAAGGAAGCAGGTGCTTTTAGTTTTTCTCAGGGGACTACGACTTACGAGGTTAAGGGT
AAGCAAGTGGTTGTCAGAGTTGTCAGTAAAGGCCAAATCAAGACCTATCGTTATGTGAAGAAACAAGATCAGAAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

45.455

94.286

0.429

  comGG Streptococcus mutans UA159

45.455

94.286

0.429

  comGG/cglG Streptococcus pneumoniae Rx1

43.333

85.714

0.371

  comGG/cglG Streptococcus pneumoniae TIGR4

43.333

85.714

0.371

  comGG/cglG Streptococcus pneumoniae D39

43.333

85.714

0.371

  comGG/cglG Streptococcus pneumoniae R6

43.333

85.714

0.371

  comGG/cglG Streptococcus mitis NCTC 12261

42.222

85.714

0.362


Multiple sequence alignment