Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   ID09_RS01115 Genome accession   NZ_CP008921
Coordinates   206210..206923 (+) Length   237 a.a.
NCBI ID   WP_012774930.1    Uniprot ID   A0A142UPI2
Organism   Streptococcus suis 6407     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 201210..211923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ID09_RS01105 (ID09_01115) treC 202276..203901 (-) 1626 WP_024390719.1 alpha,alpha-phosphotrehalase -
  ID09_RS01110 (ID09_01120) treP 203982..205976 (-) 1995 WP_024382077.1 PTS system trehalose-specific EIIBC component -
  ID09_RS01115 (ID09_01125) treR 206210..206923 (+) 714 WP_012774930.1 trehalose operon repressor Regulator
  ID09_RS01120 (ID09_01130) - 206981..207292 (+) 312 WP_002935948.1 hypothetical protein -
  ID09_RS01125 (ID09_01135) - 207289..207837 (+) 549 WP_002935945.1 CvpA family protein -
  ID09_RS01130 (ID09_01140) - 207999..210332 (+) 2334 WP_024382076.1 endonuclease MutS2 -
  ID09_RS01135 (ID09_01145) - 210356..211068 (+) 713 Protein_187 GNAT family N-acetyltransferase -
  ID09_RS01140 (ID09_01150) trxA 211431..211745 (+) 315 WP_024382075.1 thioredoxin -
  ID09_RS12620 - 211856..211906 (-) 51 WP_353735889.1 hypothetical protein -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27200.07 Da        Isoelectric Point: 6.7422

>NTDB_id=125686 ID09_RS01115 WP_012774930.1 206210..206923(+) (treR) [Streptococcus suis 6407]
MKKYQEIYNDLKEKIRTNVYPAESSLPTEQQLQEIYGVSRDTVRKALAILTEGGLIQKVQGRGSMVLKQEILNFPVSGLT
SYQELTNVLQLSTKTDVVSLDMITVNSSLSHLTGFEPYSKVWKVVRTRSIDGKVSVVDTDYLAVDVVPELTTAIAEKSIY
EYLENKLGLDIAYAQKEITVEPTNREERELMQSKDDYLVLIKSRVYLGDTQQFQYTESKHKIDKFRFVDFARRKHSL

Nucleotide


Download         Length: 714 bp        

>NTDB_id=125686 ID09_RS01115 WP_012774930.1 206210..206923(+) (treR) [Streptococcus suis 6407]
ATGAAAAAATACCAAGAAATTTATAATGACTTAAAAGAAAAAATACGGACAAATGTTTATCCGGCAGAAAGCTCCCTACC
GACAGAACAACAGCTCCAGGAAATCTATGGTGTTAGTCGTGATACGGTTCGTAAGGCTTTGGCGATTTTGACTGAGGGAG
GTTTGATTCAAAAAGTGCAAGGGCGTGGTTCAATGGTCCTTAAACAAGAAATTCTCAATTTCCCAGTTTCAGGTTTAACT
TCCTATCAGGAATTGACAAATGTTCTCCAGCTTTCTACCAAGACAGATGTTGTCAGCTTAGATATGATTACCGTTAATAG
TAGCCTTTCGCATTTGACAGGCTTTGAGCCGTATAGCAAGGTGTGGAAAGTTGTCCGTACACGTTCGATTGACGGTAAGG
TCTCCGTTGTGGATACAGATTATCTTGCTGTCGATGTTGTGCCAGAGTTGACAACAGCTATTGCTGAAAAATCCATCTAC
GAATACCTAGAAAATAAGTTAGGCCTTGATATTGCTTATGCACAAAAAGAGATTACGGTAGAGCCGACCAATCGAGAAGA
GCGTGAGCTAATGCAATCGAAGGATGATTATTTGGTCTTGATTAAATCTCGTGTCTATCTCGGTGATACCCAACAATTCC
AATATACAGAAAGCAAGCATAAAATTGATAAATTCCGCTTTGTAGATTTTGCTCGTAGAAAGCATTCTTTATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(91-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A142UPI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

52.137

98.734

0.515

Multiple sequence alignment