Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | HZ99_RS12520 | Genome accession | NZ_CP008896 |
| Coordinates | 2848974..2849846 (+) | Length | 290 a.a. |
| NCBI ID | WP_038443439.1 | Uniprot ID | A0A379IJ84 |
| Organism | Pseudomonas fluorescens strain UK4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2843974..2854846
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HZ99_RS12490 (HZ99_12790) | nadC | 2844183..2845031 (+) | 849 | WP_038443431.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| HZ99_RS12495 (HZ99_12795) | - | 2845099..2845404 (-) | 306 | WP_038443433.1 | DUF6388 family protein | - |
| HZ99_RS12505 (HZ99_12805) | - | 2845653..2847059 (-) | 1407 | WP_038443434.1 | O-antigen ligase family protein | - |
| HZ99_RS12510 (HZ99_12810) | - | 2847137..2847547 (-) | 411 | WP_038443435.1 | pilin | - |
| HZ99_RS12515 (HZ99_12815) | pilC | 2847751..2848971 (+) | 1221 | WP_038443437.1 | type II secretion system F family protein | Machinery gene |
| HZ99_RS12520 (HZ99_12820) | pilD | 2848974..2849846 (+) | 873 | WP_038443439.1 | prepilin peptidase | Machinery gene |
| HZ99_RS12525 (HZ99_12825) | coaE | 2849843..2850466 (+) | 624 | WP_038443440.1 | dephospho-CoA kinase | - |
| HZ99_RS12530 (HZ99_12830) | yacG | 2850463..2850666 (+) | 204 | WP_038443442.1 | DNA gyrase inhibitor YacG | - |
| HZ99_RS12535 (HZ99_12835) | - | 2850663..2850878 (-) | 216 | WP_038443443.1 | hypothetical protein | - |
| HZ99_RS12540 (HZ99_12840) | - | 2850942..2851631 (-) | 690 | WP_038443445.1 | energy-coupling factor ABC transporter permease | - |
| HZ99_RS12545 (HZ99_12845) | - | 2851628..2852095 (-) | 468 | WP_038443446.1 | hypothetical protein | - |
| HZ99_RS12550 (HZ99_12850) | - | 2852198..2852827 (+) | 630 | WP_038443448.1 | DUF1780 domain-containing protein | - |
| HZ99_RS12555 | - | 2852867..2853040 (+) | 174 | WP_038443450.1 | DUF3094 family protein | - |
| HZ99_RS12560 (HZ99_12860) | - | 2853101..2854399 (+) | 1299 | WP_038443451.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32153.30 Da Isoelectric Point: 7.2844
>NTDB_id=125521 HZ99_RS12520 WP_038443439.1 2848974..2849846(+) (pilD) [Pseudomonas fluorescens strain UK4]
MTLDQLLTLHPWLFVWTALLLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPCGPAYNLLQPNSCCPHCSQPIR
PWENIPVFSYLLLRARCARCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLILNYFELYVALPDALLGAVAGYLSLWSVFWLFKLCTGKDGMGYGDFKLLALLGAWGGWQILPLTLLLASLVG
AVAGVILLRMRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFK
MTLDQLLTLHPWLFVWTALLLGLIVGSFLNVLVWRLPKMLERDWRAQAHEILGLPPEPCGPAYNLLQPNSCCPHCSQPIR
PWENIPVFSYLLLRARCARCHGSISPRYPLTELACGLLSAFIAWHYGFGWPAAGVLFLSWGLLAMSLIDADHQLLPDVLV
LPLLWLGLILNYFELYVALPDALLGAVAGYLSLWSVFWLFKLCTGKDGMGYGDFKLLALLGAWGGWQILPLTLLLASLVG
AVAGVILLRMRNAQTSVPLPFGPYLAIAGWIALLWGGQITDFYLQSVGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=125521 HZ99_RS12520 WP_038443439.1 2848974..2849846(+) (pilD) [Pseudomonas fluorescens strain UK4]
ATGACCCTGGACCAACTCCTGACCCTACACCCCTGGCTGTTTGTCTGGACCGCCCTGCTGCTGGGGCTGATCGTTGGCAG
CTTCCTCAACGTACTCGTCTGGCGCCTGCCAAAAATGCTCGAACGGGACTGGCGCGCCCAGGCCCACGAAATACTCGGCC
TGCCCCCGGAACCCTGTGGCCCGGCCTATAACCTGTTGCAGCCCAACTCCTGCTGCCCGCACTGCTCCCAACCGATTCGC
CCGTGGGAAAACATCCCGGTGTTCAGTTATCTGCTGCTCAGGGCGCGCTGTGCGCGCTGTCACGGCTCCATCAGCCCGCG
CTACCCGCTAACCGAACTGGCCTGCGGGCTGCTCTCGGCATTTATTGCCTGGCACTACGGCTTTGGTTGGCCGGCCGCTG
GAGTCCTGTTCTTGAGCTGGGGCTTGCTGGCCATGAGCCTGATCGATGCCGACCACCAACTGCTGCCGGATGTGCTGGTG
CTGCCACTGTTGTGGCTGGGGCTGATCCTCAACTACTTCGAGCTGTACGTAGCCTTGCCCGATGCCCTGTTGGGCGCAGT
TGCCGGCTACCTGAGCCTGTGGTCGGTGTTTTGGCTGTTCAAGCTGTGCACCGGCAAGGACGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCCTGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACACTGTTGCTGGCATCGCTGGTGGGT
GCGGTGGCAGGGGTGATTCTGTTGCGCATGCGTAACGCGCAAACGTCGGTGCCCCTGCCTTTTGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA
ATGACCCTGGACCAACTCCTGACCCTACACCCCTGGCTGTTTGTCTGGACCGCCCTGCTGCTGGGGCTGATCGTTGGCAG
CTTCCTCAACGTACTCGTCTGGCGCCTGCCAAAAATGCTCGAACGGGACTGGCGCGCCCAGGCCCACGAAATACTCGGCC
TGCCCCCGGAACCCTGTGGCCCGGCCTATAACCTGTTGCAGCCCAACTCCTGCTGCCCGCACTGCTCCCAACCGATTCGC
CCGTGGGAAAACATCCCGGTGTTCAGTTATCTGCTGCTCAGGGCGCGCTGTGCGCGCTGTCACGGCTCCATCAGCCCGCG
CTACCCGCTAACCGAACTGGCCTGCGGGCTGCTCTCGGCATTTATTGCCTGGCACTACGGCTTTGGTTGGCCGGCCGCTG
GAGTCCTGTTCTTGAGCTGGGGCTTGCTGGCCATGAGCCTGATCGATGCCGACCACCAACTGCTGCCGGATGTGCTGGTG
CTGCCACTGTTGTGGCTGGGGCTGATCCTCAACTACTTCGAGCTGTACGTAGCCTTGCCCGATGCCCTGTTGGGCGCAGT
TGCCGGCTACCTGAGCCTGTGGTCGGTGTTTTGGCTGTTCAAGCTGTGCACCGGCAAGGACGGCATGGGCTATGGCGACT
TCAAGCTGCTGGCCCTGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACACTGTTGCTGGCATCGCTGGTGGGT
GCGGTGGCAGGGGTGATTCTGTTGCGCATGCGTAACGCGCAAACGTCGGTGCCCCTGCCTTTTGGCCCCTATCTGGCGAT
TGCCGGCTGGATTGCATTGCTCTGGGGTGGTCAAATAACCGACTTCTATTTGCAGTCTGTCGGTTTCAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.659 |
98.966 |
0.531 |
| pilD | Vibrio campbellii strain DS40M4 |
50.175 |
98.276 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
49.63 |
93.103 |
0.462 |
| pilD | Acinetobacter nosocomialis M2 |
48.889 |
93.103 |
0.455 |
| pilD | Neisseria gonorrhoeae MS11 |
51.373 |
87.931 |
0.452 |