Detailed information NTG0125431

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HY57_RS06740
• Genome accession: NZ_CP008884
• Coordinates: 1636342..1637748 (-)
• Length: 468 a.a.
• NCBI ID: WP_019464623.1
• Uniprot ID: A0A075K4B6
• Organism: Dyella japonica A8
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 1631342..1642748

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HY57_RS06725 (HY57_06865)	-	1632817..1633263 (+)	447	WP_019465375.1	response regulator	-
HY57_RS06730 (HY57_06870)	-	1633330..1634886 (+)	1557	WP_038580632.1	response regulator	-
HY57_RS21910	-	1635445..1635624 (-)	180	WP_144240784.1	hypothetical protein	-
HY57_RS06740 (HY57_06880)	pilR	1636342..1637748 (-)	1407	WP_019464623.1	sigma-54 dependent transcriptional regulator	Regulator
HY57_RS06745 (HY57_06885)	-	1637828..1638895 (-)	1068	WP_019464622.1	alpha/beta hydrolase	-
HY57_RS06750 (HY57_06890)	-	1638892..1640580 (-)	1689	WP_019464621.1	trehalase family glycosidase	-
HY57_RS06755 (HY57_06895)	-	1640660..1641925 (-)	1266	WP_026033815.1	MFS transporter	-

Sequence

Protein

• Length: 468 a.a.
• Molecular weight: 50841.33 Da
• Isoelectric Point: 6.5827

>NTDB_id=125431 HY57_RS06740 WP_019464623.1 1636342..1637748(-) (pilR) [Dyella japonica A8]
MSQQTVLVIDDERDIRELLTITLGRMDLLVDAVGTVTEARRALAERHYDLCFTDMRLPDGTGHEVVELIAAEHPDTPVAM
ITAYGNVDAAVSALKAGAFDFVSKPVDIQMLRRLVRTALRLAEEKRSGHAAAKPDGNERLIGESPVMQQVRGTIGKLARN
QAPVYIAGESGVGKELVARLIHEQGPRATGPFVPVNCGAIPSELMESEFFGHRKGSFTGAVGDKEGLFQAAHGGTLFLDE
VAELPLHMQVKLLRAIQEKAVRPIGAREEVPVDVRILSATHKNLAALVEQGQFRQDLFYRINVIELRVPPLRERRGDVPL
LANFVLRQLATKSGGTPGHLLPAAQQALESYDFPGNVRELENILERAMAMCDGDQIDVSDLMLPQRAPRAHAEAAAATPA
TASMPAAEPAQPASATANGGLDDYISNLERTAIIKALEESRYNKTAAAKKLGITFRALRYKLKKLGID

Nucleotide

• Length: 1407 bp

>NTDB_id=125431 HY57_RS06740 WP_019464623.1 1636342..1637748(-) (pilR) [Dyella japonica A8]
ATGAGCCAACAGACCGTTCTGGTCATCGATGACGAACGCGATATTCGCGAACTCCTGACCATTACCCTCGGTCGCATGGA
TTTGCTGGTCGATGCGGTGGGTACCGTGACGGAAGCCCGTCGCGCCCTCGCCGAACGCCATTACGACCTTTGCTTCACCG
ACATGCGCCTGCCTGACGGCACGGGGCATGAGGTGGTGGAGCTGATCGCCGCCGAACATCCGGACACGCCGGTCGCCATG
ATCACGGCGTACGGCAACGTCGATGCCGCGGTGAGCGCGCTCAAGGCCGGCGCCTTCGATTTCGTCTCCAAGCCGGTCGA
CATCCAGATGTTGCGCCGCCTGGTGCGCACCGCCCTGCGCCTGGCCGAGGAAAAGCGCAGCGGCCACGCCGCGGCCAAGC
CCGATGGCAACGAGCGGCTGATCGGCGAATCGCCCGTCATGCAGCAGGTGCGCGGCACCATCGGCAAGCTCGCCCGCAAC
CAGGCCCCGGTGTATATCGCCGGCGAGTCCGGCGTGGGCAAGGAGCTGGTCGCCCGCCTCATCCACGAACAAGGCCCCCG
CGCCACCGGCCCGTTCGTACCGGTGAACTGCGGCGCCATTCCCTCCGAGCTGATGGAAAGCGAGTTCTTCGGCCACCGCA
AGGGCAGCTTCACCGGCGCGGTGGGCGACAAGGAAGGCCTGTTCCAGGCCGCCCACGGCGGCACGCTGTTCCTCGACGAA
GTGGCCGAACTGCCGCTGCACATGCAGGTAAAGCTGCTGCGCGCGATCCAGGAAAAGGCCGTGCGCCCGATCGGCGCGCG
CGAGGAAGTGCCAGTGGACGTGCGCATCCTCTCGGCCACGCACAAAAACCTTGCCGCGCTGGTCGAACAGGGCCAGTTCC
GCCAGGACCTGTTCTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGGCGACGTGCCGCTG
CTCGCCAACTTCGTGCTGCGCCAGCTCGCCACCAAGAGCGGCGGCACACCCGGCCACCTGCTGCCCGCCGCCCAGCAGGC
GCTGGAGAGCTACGACTTCCCCGGCAACGTGCGCGAGCTGGAGAACATCCTCGAGCGCGCGATGGCGATGTGCGATGGCG
ACCAGATCGACGTCAGCGACCTGATGCTGCCGCAACGCGCGCCGCGCGCCCACGCTGAAGCCGCTGCAGCCACGCCCGCC
ACGGCAAGCATGCCAGCCGCTGAGCCTGCCCAGCCCGCCTCGGCCACGGCCAATGGCGGCCTTGACGACTACATCAGCAA
CCTTGAACGCACGGCGATCATCAAGGCGCTGGAGGAGTCGCGTTACAACAAGACCGCGGCGGCGAAGAAGCTGGGGATTA
CGTTCCGGGCGCTGCGGTATAAGTTGAAGAAGCTGGGTATCGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

• Bacterial regulatory protein, Fis family (HTH_8) (426-465)

• Response regulator receiver domain (Response_reg) (6-115)

3D structure

• AlphaFold DB: A0A075K4B6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	62.393	100	0.624
pilR	Acinetobacter baumannii strain A118	49.467	100	0.496