Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CUGBS98_RS09665 Genome accession   NZ_CP010875
Coordinates   1920217..1920807 (-) Length   196 a.a.
NCBI ID   WP_000272490.1    Uniprot ID   Q3JYM8
Organism   Streptococcus agalactiae strain CU_GBS_98     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1915217..1925807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CUGBS98_RS09630 (CUGBS98_01937) - 1915238..1915555 (-) 318 WP_000940931.1 DUF1292 domain-containing protein -
  CUGBS98_RS09635 (CUGBS98_01938) ruvX 1915581..1916000 (-) 420 WP_001222109.1 Holliday junction resolvase RuvX -
  CUGBS98_RS09640 (CUGBS98_01939) - 1916000..1916266 (-) 267 WP_000507056.1 IreB family regulatory phosphoprotein -
  CUGBS98_RS09645 (CUGBS98_01940) spx 1916468..1916866 (-) 399 WP_000591161.1 transcriptional regulator Spx -
  CUGBS98_RS09650 (CUGBS98_01941) recA 1917082..1918221 (-) 1140 WP_017647882.1 recombinase RecA -
  CUGBS98_RS09655 (CUGBS98_01942) cinA 1918295..1919554 (-) 1260 WP_001200975.1 competence/damage-inducible protein A Machinery gene
  CUGBS98_RS09660 (CUGBS98_01943) - 1919643..1920194 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  CUGBS98_RS09665 (CUGBS98_01944) ruvA 1920217..1920807 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA Machinery gene
  CUGBS98_RS09670 (CUGBS98_01945) - 1920809..1922041 (-) 1233 WP_000657472.1 MFS transporter -
  CUGBS98_RS09675 (CUGBS98_01946) hexB 1922073..1924046 (-) 1974 WP_000034614.1 DNA mismatch repair endonuclease MutL Machinery gene
  CUGBS98_RS09680 (CUGBS98_01947) - 1924272..1924475 (+) 204 WP_000191849.1 cold shock domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21696.94 Da        Isoelectric Point: 5.7488

>NTDB_id=125091 CUGBS98_RS09665 WP_000272490.1 1920217..1920807(-) (ruvA) [Streptococcus agalactiae strain CU_GBS_98]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=125091 CUGBS98_RS09665 WP_000272490.1 1920217..1920807(-) (ruvA) [Streptococcus agalactiae strain CU_GBS_98]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACAGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408