Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   RDF_RS08780 Genome accession   NZ_CP010867
Coordinates   1745954..1746463 (-) Length   169 a.a.
NCBI ID   WP_000392202.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain SS1     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1740954..1751463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RDF_RS08755 (RDF_1699) tsaD 1741463..1742473 (-) 1011 WP_000655088.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  RDF_RS08760 (RDF_1700) rimI 1742549..1742956 (-) 408 WP_000445943.1 ribosomal protein S18-alanine N-acetyltransferase -
  RDF_RS08765 (RDF_1701) tsaB 1742958..1743650 (-) 693 WP_000978606.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  RDF_RS08770 (RDF_1702) - 1743829..1744059 (+) 231 WP_000639569.1 DNA-dependent RNA polymerase subunit epsilon -
  RDF_RS08775 (RDF_1703) rnjA 1744113..1745792 (+) 1680 WP_000065497.1 ribonuclease J1 -
  RDF_RS08780 (RDF_1704) lytF 1745954..1746463 (-) 510 WP_000392202.1 CHAP domain-containing protein Regulator
  RDF_RS08785 (RDF_1705) glnA 1746611..1747957 (-) 1347 WP_000156225.1 type I glutamate--ammonia ligase -
  RDF_RS08790 (RDF_1706) - 1747991..1748362 (-) 372 WP_000664338.1 MerR family transcriptional regulator -
  RDF_RS08795 (RDF_1707) - 1748442..1748981 (-) 540 WP_000854121.1 FUSC family protein -
  RDF_RS08800 (RDF_1708) - 1749244..1750440 (-) 1197 WP_001096753.1 phosphoglycerate kinase -
  RDF_RS08805 (RDF_1709) - 1750575..1751444 (-) 870 WP_000858929.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18332.26 Da        Isoelectric Point: 4.4055

>NTDB_id=124867 RDF_RS08780 WP_000392202.1 1745954..1746463(-) (lytF) [Streptococcus agalactiae strain SS1]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADANTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=124867 RDF_RS08780 WP_000392202.1 1745954..1746463(-) (lytF) [Streptococcus agalactiae strain SS1]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGCGAATACATATAACTATGCAGTAGATGTAGACTACCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGAACACAACCTCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTAACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414

Multiple sequence alignment