Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   TK78_RS25250 Genome accession   NZ_CP010833
Coordinates   5720682..5721773 (+) Length   363 a.a.
NCBI ID   WP_075266585.1    Uniprot ID   -
Organism   Streptomyces sp. Tue 6075 strain Tue6075     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5715682..5726773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK78_RS25235 (TK78_24750) - 5715712..5717061 (+) 1350 WP_075266582.1 deoxyguanosinetriphosphate triphosphohydrolase -
  TK78_RS25240 (TK78_24755) - 5717200..5718459 (+) 1260 WP_075266583.1 FAD-dependent oxidoreductase -
  TK78_RS25245 (TK78_24760) dnaG 5718553..5720484 (+) 1932 WP_075266584.1 DNA primase -
  TK78_RS25250 (TK78_24765) rpoS 5720682..5721773 (+) 1092 WP_075266585.1 RNA polymerase sigma factor Regulator
  TK78_RS25255 (TK78_24770) rcrQ 5721787..5723715 (-) 1929 WP_075266586.1 ABC transporter ATP-binding protein Regulator
  TK78_RS25260 (TK78_24775) rcrP 5723715..5725448 (-) 1734 WP_075266587.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 40587.29 Da        Isoelectric Point: 6.3270

>NTDB_id=124756 TK78_RS25250 WP_075266585.1 5720682..5721773(+) (rpoS) [Streptomyces sp. Tue 6075 strain Tue6075]
MQTRTVTTTTAPMAAIPAQNRALHHPETAAGPPGHAPEAVMVEATHLPELPDPRNRADSGGPTSDLFRQYLREIGRIPLL
TAAEEVELARRVEAGLFAEERLTGTPDLDSRLAGDLDRLVVMGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAVELDL
TPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAASPVESAAFLLLRQHLEAVLSTLGERERKVVQLRYGLDDGR
PRTLEEIGRIFGVTRERIRQIESKTLSRLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=124756 TK78_RS25250 WP_075266585.1 5720682..5721773(+) (rpoS) [Streptomyces sp. Tue 6075 strain Tue6075]
GTGCAGACCCGGACCGTGACGACCACGACCGCGCCCATGGCGGCCATCCCCGCGCAGAACAGGGCCCTGCACCACCCGGA
GACCGCAGCCGGCCCGCCCGGACACGCACCCGAGGCAGTCATGGTGGAAGCGACGCACCTCCCCGAACTGCCGGACCCCA
GGAACCGGGCGGACTCCGGCGGCCCCACCTCCGACCTGTTCCGGCAGTATCTGCGCGAGATCGGCCGCATCCCCCTGCTC
ACCGCAGCCGAGGAGGTCGAGCTGGCCCGCCGCGTCGAGGCCGGACTCTTCGCCGAGGAGCGGCTCACGGGCACCCCGGA
CCTGGACTCCCGGCTCGCGGGCGACCTGGACCGGCTCGTCGTCATGGGCCGCACCGCCAAACGCCGCCTCATCGAGGCCA
ACCTCCGCCTCGTCGTCTCCGTCGCCAAGCGGTACGTGGGCCGCGGGCTGACCATGCTCGACCTCGTCCAGGAGGGCAAC
CTCGGCCTGATACGGGCGGTGGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCCACCTGGTGGATCCG
CCAGGCCATGTCCCGCGCCCTCGCGGACCAGGCCCGCACCATCCGCGTCCCCGTCCACGTCGTGGAGCTGATCAACCGCG
TCGTGCGCGTCCAGCGCCGCCTCCTCCAGGAGCGCGGCGTCGAGCCGACCGCCGAGGACATCGCCGTCGAGCTGGACCTG
ACGCCCGAGCGGGTCACCGAAGTCCTGCGCCTGGCCCAGGAACCGGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGA
CGTCTCCTTCGGCGACCTGATCGAGGACGGCGACGCCGCATCGCCCGTCGAGTCCGCTGCCTTCCTGCTGCTGCGCCAGC
ACCTGGAGGCGGTGCTCTCCACCCTCGGCGAGCGCGAACGCAAGGTCGTCCAACTGCGGTACGGCCTGGACGACGGGCGG
CCCCGCACCCTGGAGGAGATAGGACGCATCTTCGGCGTGACACGCGAACGTATCCGCCAGATCGAGTCCAAGACCCTCAG
CAGGCTGCGGGACCACGCCTTCGCCGACCAACTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(130-199)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(65-98)

Sigma-70, region 4 (Sigma70_r4)

(298-350)

Sigma-70 region 3 (Sigma70_r3)

(209-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.787

95.592

0.399

Multiple sequence alignment