Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   TK78_RS25260 Genome accession   NZ_CP010833
Coordinates   5723715..5725448 (-) Length   577 a.a.
NCBI ID   WP_075266587.1    Uniprot ID   -
Organism   Streptomyces sp. Tue 6075 strain Tue6075     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5718715..5730448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK78_RS25250 (TK78_24765) rpoS 5720682..5721773 (+) 1092 WP_075266585.1 RNA polymerase sigma factor Regulator
  TK78_RS25255 (TK78_24770) rcrQ 5721787..5723715 (-) 1929 WP_075266586.1 ABC transporter ATP-binding protein Regulator
  TK78_RS25260 (TK78_24775) rcrP 5723715..5725448 (-) 1734 WP_075266587.1 ABC transporter ATP-binding protein Regulator
  TK78_RS25265 (TK78_24780) - 5725631..5727082 (-) 1452 WP_075266588.1 FGGY family carbohydrate kinase -
  TK78_RS25270 (TK78_24785) - 5727142..5727447 (-) 306 WP_003969335.1 hypothetical protein -
  TK78_RS25290 (TK78_24805) - 5728183..5728743 (-) 561 WP_075266589.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62169.31 Da        Isoelectric Point: 5.2460

>NTDB_id=124758 TK78_RS25260 WP_075266587.1 5723715..5725448(-) (rcrP) [Streptomyces sp. Tue 6075 strain Tue6075]
MLIKLLRAHLGPYKKPIVLLVLLQLLQTCATLYLPSLNADIIDNGVVTGDTGYILEFGGLMIAVSVLQVLCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPTLITRTTNDVQQVQMLVLLAFTLMVSAPIMCVGGIIMALGLDVPLSAV
LLAVVPVLGVSVGLIVRKMGPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTESSVVP
PVAPVLELGRHGHLEVRGAEFRYPGAEEPVLRNIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGEVLVDGEDVR
TLDPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEVAQAKEFVAALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRLVGTGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=124758 TK78_RS25260 WP_075266587.1 5723715..5725448(-) (rcrP) [Streptomyces sp. Tue 6075 strain Tue6075]
GTGCTCATAAAACTCCTGCGGGCCCATCTGGGCCCGTACAAGAAACCCATCGTGCTGCTGGTCCTCCTCCAGCTGCTCCA
GACCTGCGCCACCCTGTATCTGCCCAGCCTGAACGCCGACATCATTGACAACGGTGTCGTGACCGGCGACACCGGCTACA
TCCTGGAGTTCGGCGGTCTCATGATCGCCGTCAGCGTTCTCCAGGTTCTGTGCAATGTGGGGGCCGTGTACTACGGGGCC
CGTACCGCCTCCGCACTCGGGCGTGATGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCGGCCCGGGAGCTGGG
GCGCTTCGGGGCGCCTACGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGCTGGCGTTCA
CGCTGATGGTGTCGGCCCCGATCATGTGCGTGGGCGGGATCATCATGGCGCTCGGCCTGGATGTGCCGCTCTCCGCCGTG
CTGCTGGCGGTCGTGCCGGTGCTCGGGGTCTCGGTCGGGCTCATCGTGCGGAAGATGGGGCCCCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGGGCGTTCGTCCGGGACG
GGTACGAGGAGAAGCGCTTCCGGGGTGCGAACACCGAGCTGACCGATGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTCATGACGGTGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGTGCGCTGACCGCGTTCCTCGCCTATCTCATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCGAGGAGGTCCTCGGGACCGAGTCGAGTGTCGTGCCG
CCCGTCGCGCCGGTCCTGGAGTTGGGCCGGCACGGGCATCTGGAGGTGCGGGGGGCCGAGTTCCGTTATCCGGGGGCGGA
GGAGCCGGTGCTGCGGAACATCGACCTGGTGGCCCGGCCCGGGGAGACCACCGCGGTCATCGGGTCCACCGGCAGCGGGA
AGTCCACCCTGCTCGGGCTCGTACCCCGGCTGTTCGATGTGACGGACGGCGAGGTACTGGTCGACGGCGAGGACGTGCGG
ACGCTGGATCCGGCGCTGCTGGCGAAGACGGTGTCCCTGGTGCCGCAGAAGCCGTACCTCTTCTCGGGGACGGTGGCGAC
GAACCTGCGGTACGGGAATCCGGACGCGAGCGATGAGGAGCTGTGGCATGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGGCTGCGCTGGAGCACGGGCTCGACGCCCCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCGTTCTCCGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCGCTGGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTGGACGAGGGCAGGCTCGTGGGCACCGGCACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.937

100

0.393