Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   TK78_RS25255 Genome accession   NZ_CP010833
Coordinates   5721787..5723715 (-) Length   642 a.a.
NCBI ID   WP_075266586.1    Uniprot ID   -
Organism   Streptomyces sp. Tue 6075 strain Tue6075     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5716787..5728715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TK78_RS25240 (TK78_24755) - 5717200..5718459 (+) 1260 WP_075266583.1 FAD-dependent oxidoreductase -
  TK78_RS25245 (TK78_24760) dnaG 5718553..5720484 (+) 1932 WP_075266584.1 DNA primase -
  TK78_RS25250 (TK78_24765) rpoS 5720682..5721773 (+) 1092 WP_075266585.1 RNA polymerase sigma factor Regulator
  TK78_RS25255 (TK78_24770) rcrQ 5721787..5723715 (-) 1929 WP_075266586.1 ABC transporter ATP-binding protein Regulator
  TK78_RS25260 (TK78_24775) rcrP 5723715..5725448 (-) 1734 WP_075266587.1 ABC transporter ATP-binding protein Regulator
  TK78_RS25265 (TK78_24780) - 5725631..5727082 (-) 1452 WP_075266588.1 FGGY family carbohydrate kinase -
  TK78_RS25270 (TK78_24785) - 5727142..5727447 (-) 306 WP_003969335.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69214.58 Da        Isoelectric Point: 5.0080

>NTDB_id=124757 TK78_RS25255 WP_075266586.1 5721787..5723715(-) (rcrQ) [Streptomyces sp. Tue 6075 strain Tue6075]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFGREKASLWLMLGAVAVSVALSVAGPKILGKATDLVFAGVVGREMAGGT
TKAQAIEGLREDGRGSMADMLSGVDFTPGEGIDFGAVGNVLLLALVVYVGAGLLMLVATRVSIRVINRIVFQLREDLQTK
LARLPLSYFDRAKRGEVLSRATNDIDNISQTLQQTMGQLINSLLTIVGVLIVMFWISPLLALVALVTVPLSVVVATQVGK
RSQPQFVRQWQVTGKLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYEAGFKAQFASGIMQPLMFFISNINYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLIQSGIASAERVFELLDAEEQEPDPERGERPERPAGRVSLE
KVSFRYEPEKPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSREDLRSSIGMVLQDT
WLFGGTIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDSVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLAAGGAYARLYAAQFAEALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=124757 TK78_RS25255 WP_075266586.1 5721787..5723715(-) (rcrQ) [Streptomyces sp. Tue 6075 strain Tue6075]
ATGGCCGGTCCGGGCGGAAGGATGATGGCCGGGGGCGCGCCCACCGACCGGTCGATGGATTTCAAGGGGTCGAGCAAGCG
GCTGCTGAAGCGGTTCGGCCGGGAGAAGGCCTCGCTGTGGCTGATGCTGGGCGCGGTGGCGGTGAGCGTCGCGCTGTCGG
TGGCCGGGCCGAAGATCCTGGGGAAGGCGACCGACCTGGTCTTCGCCGGGGTGGTCGGGCGGGAGATGGCCGGGGGCACG
ACGAAGGCGCAGGCGATCGAGGGGCTGCGGGAGGACGGCCGGGGGTCGATGGCCGACATGCTGTCGGGCGTGGACTTCAC
CCCGGGTGAGGGCATCGACTTCGGCGCGGTGGGGAACGTCCTGCTGCTGGCCCTGGTGGTCTACGTCGGGGCCGGGCTGC
TGATGCTGGTGGCGACGCGGGTGTCGATCCGGGTGATCAACCGGATCGTGTTCCAGCTGCGCGAGGACCTCCAGACGAAG
CTGGCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGTGAGGTGCTGAGCCGGGCGACGAACGACATCGACAA
CATCTCGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGCTGCTGACGATCGTCGGCGTGCTGATCGTGATGT
TCTGGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTCCCGCTGTCGGTGGTCGTGGCGACGCAGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCGGCAGTGGCAGGTGACGGGGAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTGTTCGGCCGCCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCCCTGTACGAAGCGG
GCTTCAAGGCCCAGTTCGCCAGCGGGATCATGCAGCCGCTGATGTTCTTCATCTCGAACATCAACTATGTGCTGGTCGCG
GTGGTCGGCGGGCTGCGCGTCGCCTCGGGCGCGTTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCCAACCTCATCCAGTCCGGTATCGCGTCGGCGGAGCGCGTCTTCGAGC
TGCTGGACGCCGAGGAGCAGGAGCCGGACCCGGAGCGCGGGGAACGCCCGGAGCGGCCGGCGGGCCGGGTATCGCTGGAG
AAGGTGTCCTTCCGCTACGAGCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGAGCGTGGAGCCGGGGCAGACCGTCGC
GATCGTCGGTCCGACGGGGGCGGGCAAGACGACCCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGGCGGGCGGA
TCGCGCTCGACGGGGTCGATGTGGCGAAGATGTCCCGGGAAGATCTGCGGTCGTCCATAGGGATGGTCCTCCAGGACACC
TGGCTGTTCGGCGGGACGATCGCGGAGAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGC
GGCCCGGGCGGCGCATGCGGACCGGTTCGTCCGGACGCTGCCCGACGGGTACGACTCGGTGATCGACGACGAGGGGACCG
GGGTCAGCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCTCGCCTGGCCCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGATGCGGACGTGATCCTGGTGATGGAGAGCGGGTCGATCGTCGAACAGG
GCACGCACGAGGAGCTGTTGGCTGCCGGTGGCGCCTATGCCCGGCTGTACGCCGCCCAGTTCGCGGAGGCACTGGCCGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(43-351)

ABC transporter (ABC_tran)

(414-563)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.939

82.243

0.361